Strain Fitness in Agrobacterium fabrum C58 around Atu4398

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,532,877	-				-0.1
1,532,888	-				-0.3
1,532,888	-				-0.0
1,532,890	+				-0.6
1,532,922	+				-0.4
1,533,012	+		Atu4397	0.14	-0.6
1,533,020	-		Atu4397	0.15	+0.3
1,533,023	+		Atu4397	0.15	-0.2
1,533,051	+		Atu4397	0.18	+0.3
1,533,058	+		Atu4397	0.19	-0.1
1,533,076	-		Atu4397	0.20	-0.8
1,533,079	-		Atu4397	0.21	+1.4
1,533,217	+		Atu4397	0.35	+0.9
1,533,222	+		Atu4397	0.35	-0.1
1,533,304	+		Atu4397	0.44	+0.2
1,533,304	-		Atu4397	0.44	+0.1
1,533,344	-		Atu4397	0.48	-0.2
1,533,421	-		Atu4397	0.56	-0.5
1,533,559	+		Atu4397	0.70	-0.8
1,533,562	-		Atu4397	0.70	-0.0
1,533,567	-		Atu4397	0.71	+0.5
1,533,567	-		Atu4397	0.71	+0.1
1,533,569	+		Atu4397	0.71	+0.3
1,533,605	-		Atu4397	0.74	-0.7
1,533,610	-		Atu4397	0.75	-0.8
1,533,647	+		Atu4397	0.79	+0.0
1,533,647	+		Atu4397	0.79	-0.6
1,533,647	+		Atu4397	0.79	+1.5
1,533,728	+		Atu4397	0.87	-0.0
1,533,735	+		Atu4397	0.88	-0.3
1,533,743	-		Atu4397	0.89	+0.3
1,533,768	+				+0.2
1,533,768	-				-0.0
1,533,808	-				-0.8
1,534,048	+		Atu4398	0.20	+0.4
1,534,056	-		Atu4398	0.21	-0.0
1,534,056	-		Atu4398	0.21	+0.9
1,534,056	-		Atu4398	0.21	-0.0
1,534,152	-		Atu4398	0.31	+0.9
1,534,152	-		Atu4398	0.31	-0.2
1,534,197	-		Atu4398	0.36	+0.1
1,534,414	+		Atu4398	0.59	+0.4
1,534,416	-		Atu4398	0.59	+0.0
1,534,426	+		Atu4398	0.60	+1.6
1,534,514	+		Atu4398	0.70	+0.2
1,534,541	-		Atu4398	0.73	+0.1
1,534,709	-				-0.3
1,534,719	-				+0.6
1,534,869	+		Atu4399	0.20	+0.2
1,534,882	+		Atu4399	0.23	-0.4
1,534,890	-		Atu4399	0.25	-0.0
1,534,890	-		Atu4399	0.25	-0.1
1,534,890	-		Atu4399	0.25	-0.8
1,535,052	+		Atu4399	0.68	-0.4
1,535,094	-		Atu4399	0.79	+0.6
1,535,100	+		Atu4399	0.81	-0.1
1,535,200	-				+0.3
1,535,255	-				+0.1
1,535,331	+				+0.1
1,535,367	-				-0.3
1,535,372	+				-0.2
1,535,372	+				-1.8
1,535,396	-				+0.1
1,535,437	+				-0.2
1,535,445	-				-0.3
1,535,481	+				-0.0
1,535,493	-		Atu4400	0.10	-0.2
1,535,600	-		Atu4400	0.15	-0.0
1,535,610	+		Atu4400	0.16	+0.6
1,535,679	+		Atu4400	0.19	+0.3
1,535,694	+		Atu4400	0.20	+0.8
1,535,694	+		Atu4400	0.20	-0.2
1,535,702	-		Atu4400	0.20	-0.4
1,535,712	-		Atu4400	0.21	+0.2
1,535,712	-		Atu4400	0.21	-0.2