Strain Fitness in Agrobacterium fabrum C58 around Atu4356

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,491,736	+		Atu4355	0.62	-0.3
1,491,744	-		Atu4355	0.62	-0.3
1,491,838	-		Atu4355	0.68	+0.4
1,491,841	+		Atu4355	0.68	-0.4
1,491,867	+		Atu4355	0.70	+0.0
1,491,946	-		Atu4355	0.75	-0.0
1,491,975	+		Atu4355	0.77	-0.0
1,491,975	+		Atu4355	0.77	+1.6
1,491,983	-		Atu4355	0.77	-0.0
1,491,983	-		Atu4355	0.77	+0.3
1,492,002	+		Atu4355	0.79	-0.1
1,492,025	+		Atu4355	0.80	-1.1
1,492,029	-		Atu4355	0.80	+0.1
1,492,208	-				+0.1
1,492,373	+				-0.4
1,492,381	-				-0.4
1,492,487	-				-0.1
1,492,672	+				-0.2
1,492,749	+				+0.4
1,492,861	+		Atu4356	0.15	+0.2
1,492,897	+		Atu4356	0.18	+1.1
1,492,897	+		Atu4356	0.18	+1.1
1,492,905	-		Atu4356	0.19	+1.2
1,492,998	-		Atu4356	0.28	-0.5
1,493,036	+		Atu4356	0.32	-1.2
1,493,044	-		Atu4356	0.33	+0.6
1,493,136	+		Atu4356	0.42	+0.1
1,493,137	-		Atu4356	0.42	+0.7
1,493,142	-		Atu4356	0.42	+0.2
1,493,258	+		Atu4356	0.54	-0.4
1,493,258	+		Atu4356	0.54	+1.6
1,493,258	+		Atu4356	0.54	+0.6
1,493,266	-		Atu4356	0.55	+1.2
1,493,266	-		Atu4356	0.55	+0.6
1,493,266	-		Atu4356	0.55	+0.6
1,493,271	+		Atu4356	0.55	+0.3
1,493,330	+		Atu4356	0.61	+0.6
1,493,359	+		Atu4356	0.64	-0.8
1,493,362	-		Atu4356	0.64	+0.5
1,493,490	-		Atu4356	0.77	+1.3
1,493,501	+		Atu4356	0.78	-0.7
1,493,514	+		Atu4356	0.79	+0.4
1,493,604	-		Atu4356	0.88	+0.2
1,493,604	-		Atu4356	0.88	+0.8
1,493,627	+				+0.5
1,493,720	+				+0.3
1,493,759	-				+0.4
1,493,934	-				-0.4
1,493,936	+				-0.2
1,493,956	+				+0.5
1,493,964	-				+0.0
1,493,978	-				-0.2
1,494,004	+				-0.2
1,494,062	+		Atu4357	0.15	+0.0
1,494,099	+		Atu4357	0.21	-0.1
1,494,121	+		Atu4357	0.24	+0.1
1,494,143	+		Atu4357	0.28	-0.1
1,494,143	+		Atu4357	0.28	+0.4
1,494,146	-		Atu4357	0.28	-0.3
1,494,151	-		Atu4357	0.29	-0.1
1,494,178	+		Atu4357	0.33	+0.0
1,494,219	+		Atu4357	0.39	-1.3
1,494,226	-		Atu4357	0.40	-1.0
1,494,226	-		Atu4357	0.40	-0.5
1,494,394	-		Atu4357	0.65	+0.2
1,494,401	-		Atu4357	0.66	+0.1
1,494,471	-		Atu4357	0.77	-0.2
1,494,471	-		Atu4357	0.77	-0.1
1,494,489	-		Atu4357	0.80	+0.0
1,494,610	+				+1.0