Strain Fitness in Agrobacterium fabrum C58 around Atu4077

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,194,669	-		Atu4076	0.24	+0.3
1,194,713	+		Atu4076	0.28	-0.8
1,194,725	+		Atu4076	0.29	-0.9
1,194,733	-		Atu4076	0.29	-0.1
1,194,786	+		Atu4076	0.33	-0.1
1,194,888	+		Atu4076	0.41	+0.5
1,194,896	-		Atu4076	0.42	-0.2
1,194,896	-		Atu4076	0.42	+0.5
1,195,002	+		Atu4076	0.50	-0.6
1,195,119	-		Atu4076	0.60	+0.8
1,195,194	-		Atu4076	0.66	-0.4
1,195,262	-		Atu4076	0.71	-0.2
1,195,419	+		Atu4076	0.83	-1.7
1,195,419	+		Atu4076	0.83	+0.8
1,195,427	-		Atu4076	0.84	-0.5
1,195,427	-		Atu4076	0.84	-2.0
1,195,427	-		Atu4076	0.84	+0.3
1,195,427	-		Atu4076	0.84	+1.0
1,195,463	-		Atu4076	0.87	+0.6
1,195,970	+		Atu4077	0.15	-0.1
1,196,024	+		Atu4077	0.17	-0.6
1,196,056	+		Atu4077	0.18	-1.5
1,196,120	-		Atu4077	0.21	+0.1
1,196,144	-		Atu4077	0.22	-1.1
1,196,147	+		Atu4077	0.23	-0.8
1,196,462	+		Atu4077	0.37	-0.8
1,196,533	+		Atu4077	0.40	-0.0
1,196,580	+		Atu4077	0.42	-1.2
1,196,580	+		Atu4077	0.42	-1.3
1,196,784	-		Atu4077	0.51	-0.9
1,196,790	+		Atu4077	0.52	-1.1
1,196,798	-		Atu4077	0.52	-0.4
1,196,811	-		Atu4077	0.53	-0.3
1,196,860	+		Atu4077	0.55	-0.9
1,196,928	-		Atu4077	0.58	-0.1
1,196,930	-		Atu4077	0.58	-0.1
1,196,978	+		Atu4077	0.60	+0.0
1,196,978	+		Atu4077	0.60	-0.8
1,196,978	+		Atu4077	0.60	-2.6
1,196,980	-		Atu4077	0.60	+0.2
1,196,981	-		Atu4077	0.60	-0.9
1,196,986	-		Atu4077	0.61	-1.1
1,197,010	-		Atu4077	0.62	-0.9
1,197,055	+		Atu4077	0.64	-1.5
1,197,131	+		Atu4077	0.67	-0.9
1,197,213	-		Atu4077	0.71	-1.1
1,197,329	+		Atu4077	0.76	-0.5
1,197,413	+		Atu4077	0.80	-0.5
1,197,413	+		Atu4077	0.80	-0.8
1,197,443	-		Atu4077	0.81	-1.0
1,197,520	-		Atu4077	0.85	-0.1
1,197,586	-		Atu4077	0.88	-0.5
1,197,651	-				-1.3
1,197,651	-				-1.1
1,197,914	+				-1.2
1,197,988	-				+0.7
1,198,037	+				-0.5
1,198,047	-				-1.0
1,198,114	-		Atu4078	0.10	-0.4
1,198,139	-		Atu4078	0.11	-0.1
1,198,385	+		Atu4078	0.21	-0.5
1,198,493	+		Atu4078	0.26	-0.6
1,198,552	-		Atu4078	0.28	-0.6
1,198,687	-		Atu4078	0.34	-0.3
1,198,697	-		Atu4078	0.34	+0.0
1,198,697	-		Atu4078	0.34	-0.8
1,198,789	-		Atu4078	0.38	-2.0
1,198,826	+		Atu4078	0.39	-0.8
1,198,831	+		Atu4078	0.40	-0.7
1,198,843	-		Atu4078	0.40	-0.6
1,198,853	-		Atu4078	0.40	+0.4