Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3687 and Atu3688 are separated by 53 nucleotides Atu3688 and Atu3689 overlap by 4 nucleotides
Atu3687: Atu3687 - TonB-dependent receptor, at 760,897 to 763,335
Atu3687
Atu3688: Atu3688 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 763,389 to 764,309
Atu3688
Atu3689: Atu3689 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 764,306 to 765,355
Atu3689
Position (kb) 763
764
765 Strain fitness (log2 ratio) -1
0
1 at 762.404 kb on - strand, within Atu3687 at 762.419 kb on + strand, within Atu3687 at 762.429 kb on + strand, within Atu3687 at 762.437 kb on - strand, within Atu3687 at 762.507 kb on - strand, within Atu3687 at 762.507 kb on - strand, within Atu3687 at 762.512 kb on - strand, within Atu3687 at 762.572 kb on - strand, within Atu3687 at 762.622 kb on + strand, within Atu3687 at 762.676 kb on + strand, within Atu3687 at 762.709 kb on + strand, within Atu3687 at 762.709 kb on + strand, within Atu3687 at 762.709 kb on + strand, within Atu3687 at 762.799 kb on - strand, within Atu3687 at 762.939 kb on + strand, within Atu3687 at 762.939 kb on + strand, within Atu3687 at 762.947 kb on - strand, within Atu3687 at 762.974 kb on - strand, within Atu3687 at 763.055 kb on + strand, within Atu3687 at 763.073 kb on - strand, within Atu3687 at 763.073 kb on - strand, within Atu3687 at 763.160 kb on - strand at 763.190 kb on - strand at 763.453 kb on + strand at 763.476 kb on + strand at 763.484 kb on - strand, within Atu3688 at 763.484 kb on - strand, within Atu3688 at 763.609 kb on + strand, within Atu3688 at 763.628 kb on + strand, within Atu3688 at 763.950 kb on - strand, within Atu3688 at 764.071 kb on + strand, within Atu3688 at 764.378 kb on + strand at 764.448 kb on + strand, within Atu3689 at 764.449 kb on + strand, within Atu3689 at 764.462 kb on + strand, within Atu3689 at 764.464 kb on - strand, within Atu3689 at 764.470 kb on - strand, within Atu3689 at 764.564 kb on + strand, within Atu3689 at 764.834 kb on + strand, within Atu3689 at 764.837 kb on - strand, within Atu3689 at 764.866 kb on + strand, within Atu3689 at 764.960 kb on - strand, within Atu3689 at 765.000 kb on + strand, within Atu3689 at 765.008 kb on - strand, within Atu3689 at 765.050 kb on + strand, within Atu3689 at 765.099 kb on + strand, within Atu3689 at 765.107 kb on - strand, within Atu3689 at 765.107 kb on - strand, within Atu3689 at 765.290 kb on + strand at 765.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 762,404 - Atu3687 0.62 -0.2 762,419 + Atu3687 0.62 +0.5 762,429 + Atu3687 0.63 -0.1 762,437 - Atu3687 0.63 +0.2 762,507 - Atu3687 0.66 -0.1 762,507 - Atu3687 0.66 +0.2 762,512 - Atu3687 0.66 +1.0 762,572 - Atu3687 0.69 -1.0 762,622 + Atu3687 0.71 -0.1 762,676 + Atu3687 0.73 +0.2 762,709 + Atu3687 0.74 -0.7 762,709 + Atu3687 0.74 +0.4 762,709 + Atu3687 0.74 -0.3 762,799 - Atu3687 0.78 -0.6 762,939 + Atu3687 0.84 -0.1 762,939 + Atu3687 0.84 +0.1 762,947 - Atu3687 0.84 +0.5 762,974 - Atu3687 0.85 -0.2 763,055 + Atu3687 0.88 +0.0 763,073 - Atu3687 0.89 -0.2 763,073 - Atu3687 0.89 +1.0 763,160 - +0.2 763,190 - +1.3 763,453 + -0.5 763,476 + +0.3 763,484 - Atu3688 0.10 -0.7 763,484 - Atu3688 0.10 -0.2 763,609 + Atu3688 0.24 -0.7 763,628 + Atu3688 0.26 -0.4 763,950 - Atu3688 0.61 -0.8 764,071 + Atu3688 0.74 -1.0 764,378 + +0.1 764,448 + Atu3689 0.14 +0.2 764,449 + Atu3689 0.14 -0.0 764,462 + Atu3689 0.15 -0.0 764,464 - Atu3689 0.15 -0.9 764,470 - Atu3689 0.16 +0.2 764,564 + Atu3689 0.25 -0.6 764,834 + Atu3689 0.50 +0.3 764,837 - Atu3689 0.51 -0.0 764,866 + Atu3689 0.53 +0.1 764,960 - Atu3689 0.62 +0.5 765,000 + Atu3689 0.66 -0.5 765,008 - Atu3689 0.67 -0.4 765,050 + Atu3689 0.71 -0.0 765,099 + Atu3689 0.76 -1.0 765,107 - Atu3689 0.76 +0.4 765,107 - Atu3689 0.76 -0.4 765,290 + -0.5 765,298 - -0.7
Or see this region's nucleotide sequence