Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3500 and Atu3501 are separated by 15 nucleotides Atu3501 and Atu3502 are separated by 5 nucleotides Atu3502 and Atu3503 are separated by 3 nucleotides
Atu3500: Atu3500 - hypothetical protein, at 550,981 to 551,793
Atu3500
Atu3501: Atu3501 - ABC transporter permease, at 551,809 to 552,834
Atu3501
Atu3502: Atu3502 - ABC transporter permease, at 552,840 to 553,727
Atu3502
Atu3503: Atu3503 - ABC transporter permease, at 553,731 to 554,564
Atu3503
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1
2 at 550.811 kb on - strand at 550.862 kb on - strand at 550.865 kb on + strand at 550.947 kb on - strand at 550.995 kb on - strand at 551.031 kb on - strand at 551.176 kb on + strand, within Atu3500 at 551.176 kb on + strand, within Atu3500 at 551.179 kb on - strand, within Atu3500 at 551.225 kb on - strand, within Atu3500 at 551.392 kb on + strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.436 kb on - strand, within Atu3500 at 551.471 kb on - strand, within Atu3500 at 551.490 kb on + strand, within Atu3500 at 551.533 kb on + strand, within Atu3500 at 551.533 kb on + strand, within Atu3500 at 551.681 kb on + strand, within Atu3500 at 551.689 kb on - strand, within Atu3500 at 551.707 kb on + strand, within Atu3500 at 551.715 kb on + strand at 551.715 kb on - strand at 551.735 kb on - strand at 551.774 kb on + strand at 551.814 kb on - strand at 551.950 kb on + strand, within Atu3501 at 552.088 kb on - strand, within Atu3501 at 552.126 kb on + strand, within Atu3501 at 552.152 kb on + strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.205 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.215 kb on - strand, within Atu3501 at 552.380 kb on - strand, within Atu3501 at 552.405 kb on - strand, within Atu3501 at 552.448 kb on - strand, within Atu3501 at 552.483 kb on - strand, within Atu3501 at 552.954 kb on + strand, within Atu3502 at 553.016 kb on - strand, within Atu3502 at 553.024 kb on + strand, within Atu3502 at 553.090 kb on + strand, within Atu3502 at 553.103 kb on - strand, within Atu3502 at 553.108 kb on + strand, within Atu3502 at 553.108 kb on - strand, within Atu3502 at 553.190 kb on - strand, within Atu3502 at 553.211 kb on + strand, within Atu3502 at 553.367 kb on - strand, within Atu3502 at 553.410 kb on - strand, within Atu3502 at 553.481 kb on - strand, within Atu3502 at 553.506 kb on - strand, within Atu3502 at 553.563 kb on + strand, within Atu3502 at 553.571 kb on + strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.579 kb on - strand, within Atu3502 at 553.623 kb on + strand, within Atu3502 at 553.707 kb on - strand at 553.742 kb on + strand at 553.744 kb on + strand at 553.752 kb on - strand at 553.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 550,811 - -0.7 550,862 - +2.1 550,865 + +0.4 550,947 - +1.6 550,995 - -0.4 551,031 - -0.2 551,176 + Atu3500 0.24 -0.1 551,176 + Atu3500 0.24 -0.4 551,179 - Atu3500 0.24 -0.5 551,225 - Atu3500 0.30 -0.6 551,392 + Atu3500 0.51 -0.3 551,400 - Atu3500 0.52 -0.8 551,400 - Atu3500 0.52 +0.7 551,436 - Atu3500 0.56 -0.1 551,471 - Atu3500 0.60 +0.6 551,490 + Atu3500 0.63 +0.0 551,533 + Atu3500 0.68 -0.6 551,533 + Atu3500 0.68 +0.3 551,681 + Atu3500 0.86 -0.4 551,689 - Atu3500 0.87 -0.2 551,707 + Atu3500 0.89 -0.2 551,715 + -0.3 551,715 - +0.1 551,735 - -0.9 551,774 + -0.3 551,814 - -0.1 551,950 + Atu3501 0.14 -0.1 552,088 - Atu3501 0.27 +0.1 552,126 + Atu3501 0.31 +1.1 552,152 + Atu3501 0.33 +0.4 552,205 - Atu3501 0.39 +1.1 552,205 - Atu3501 0.39 +0.1 552,215 - Atu3501 0.40 +1.1 552,215 - Atu3501 0.40 +0.5 552,380 - Atu3501 0.56 -0.3 552,405 - Atu3501 0.58 +0.0 552,448 - Atu3501 0.62 -0.7 552,483 - Atu3501 0.66 -0.4 552,954 + Atu3502 0.13 +0.5 553,016 - Atu3502 0.20 -0.2 553,024 + Atu3502 0.21 -0.5 553,090 + Atu3502 0.28 -1.5 553,103 - Atu3502 0.30 -1.1 553,108 + Atu3502 0.30 +0.1 553,108 - Atu3502 0.30 +0.7 553,190 - Atu3502 0.39 +0.1 553,211 + Atu3502 0.42 +0.9 553,367 - Atu3502 0.59 -0.0 553,410 - Atu3502 0.64 -0.1 553,481 - Atu3502 0.72 +0.1 553,506 - Atu3502 0.75 -0.4 553,563 + Atu3502 0.81 +1.4 553,571 + Atu3502 0.82 -1.1 553,579 - Atu3502 0.83 -0.3 553,579 - Atu3502 0.83 -0.3 553,623 + Atu3502 0.88 +0.2 553,707 - -0.3 553,742 + -0.0 553,744 + +0.3 553,752 - -0.7 553,752 - +0.2
Or see this region's nucleotide sequence