Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3338 and Atu3339 are separated by 63 nucleotides Atu3339 and Atu3340 overlap by 4 nucleotides Atu3340 and Atu3341 are separated by 10 nucleotides
Atu3338: Atu3338 - trehalose/maltose ABC transporter substrate-binding protein, at 372,478 to 373,743
Atu3338
Atu3339: Atu3339 - trehalose/maltose ABC transporter permease, at 373,807 to 374,781
Atu3339
Atu3340: Atu3340 - trehalose/maltose ABC transporter permease, at 374,778 to 375,611
Atu3340
Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650
Atu3341
Position (kb) 373
374
375 Strain fitness (log2 ratio) -2
-1
0
1 at 372.902 kb on - strand, within Atu3338 at 372.952 kb on + strand, within Atu3338 at 373.020 kb on - strand, within Atu3338 at 373.035 kb on - strand, within Atu3338 at 373.056 kb on - strand, within Atu3338 at 373.076 kb on - strand, within Atu3338 at 373.162 kb on + strand, within Atu3338 at 373.229 kb on + strand, within Atu3338 at 373.229 kb on + strand, within Atu3338 at 373.237 kb on - strand, within Atu3338 at 373.269 kb on + strand, within Atu3338 at 373.356 kb on - strand, within Atu3338 at 373.463 kb on + strand, within Atu3338 at 373.540 kb on + strand, within Atu3338 at 373.580 kb on + strand, within Atu3338 at 373.595 kb on + strand, within Atu3338 at 373.638 kb on + strand at 373.638 kb on + strand at 373.638 kb on + strand at 373.646 kb on - strand at 373.651 kb on + strand at 373.651 kb on + strand at 373.706 kb on + strand at 373.714 kb on - strand at 373.714 kb on - strand at 373.737 kb on - strand at 373.822 kb on + strand at 373.962 kb on - strand, within Atu3339 at 374.032 kb on - strand, within Atu3339 at 374.032 kb on - strand, within Atu3339 at 374.032 kb on - strand, within Atu3339 at 374.096 kb on + strand, within Atu3339 at 374.221 kb on - strand, within Atu3339 at 374.254 kb on + strand, within Atu3339 at 374.262 kb on - strand, within Atu3339 at 374.286 kb on + strand, within Atu3339 at 374.315 kb on + strand, within Atu3339 at 374.467 kb on - strand, within Atu3339 at 374.492 kb on - strand, within Atu3339 at 374.572 kb on - strand, within Atu3339 at 374.592 kb on + strand, within Atu3339 at 374.622 kb on + strand, within Atu3339 at 374.622 kb on + strand, within Atu3339 at 374.630 kb on - strand, within Atu3339 at 374.630 kb on - strand, within Atu3339 at 374.774 kb on + strand at 374.818 kb on + strand at 374.868 kb on + strand, within Atu3340 at 374.868 kb on + strand, within Atu3340 at 375.057 kb on - strand, within Atu3340 at 375.103 kb on - strand, within Atu3340 at 375.232 kb on - strand, within Atu3340 at 375.301 kb on + strand, within Atu3340 at 375.309 kb on - strand, within Atu3340 at 375.316 kb on - strand, within Atu3340 at 375.347 kb on - strand, within Atu3340 at 375.364 kb on + strand, within Atu3340 at 375.364 kb on + strand, within Atu3340 at 375.372 kb on - strand, within Atu3340 at 375.372 kb on - strand, within Atu3340 at 375.426 kb on - strand, within Atu3340 at 375.577 kb on + strand at 375.577 kb on + strand at 375.626 kb on + strand at 375.665 kb on + strand at 375.665 kb on + strand at 375.756 kb on + strand, within Atu3341
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 372,902 - Atu3338 0.33 -0.8 372,952 + Atu3338 0.37 -0.1 373,020 - Atu3338 0.43 -1.4 373,035 - Atu3338 0.44 -0.4 373,056 - Atu3338 0.46 -1.2 373,076 - Atu3338 0.47 -0.3 373,162 + Atu3338 0.54 -0.3 373,229 + Atu3338 0.59 -0.5 373,229 + Atu3338 0.59 -1.2 373,237 - Atu3338 0.60 -0.4 373,269 + Atu3338 0.62 -1.0 373,356 - Atu3338 0.69 +0.2 373,463 + Atu3338 0.78 -0.1 373,540 + Atu3338 0.84 -1.3 373,580 + Atu3338 0.87 -0.4 373,595 + Atu3338 0.88 -0.4 373,638 + -0.5 373,638 + -1.9 373,638 + -0.3 373,646 - -1.1 373,651 + -0.3 373,651 + -2.3 373,706 + -0.5 373,714 - -0.5 373,714 - -0.7 373,737 - -1.4 373,822 + -0.5 373,962 - Atu3339 0.16 +0.1 374,032 - Atu3339 0.23 -0.2 374,032 - Atu3339 0.23 -1.7 374,032 - Atu3339 0.23 -0.6 374,096 + Atu3339 0.30 -0.6 374,221 - Atu3339 0.42 -1.7 374,254 + Atu3339 0.46 -0.3 374,262 - Atu3339 0.47 -1.8 374,286 + Atu3339 0.49 -0.1 374,315 + Atu3339 0.52 -1.0 374,467 - Atu3339 0.68 +1.0 374,492 - Atu3339 0.70 -0.8 374,572 - Atu3339 0.78 +0.9 374,592 + Atu3339 0.81 -0.6 374,622 + Atu3339 0.84 -0.2 374,622 + Atu3339 0.84 +0.4 374,630 - Atu3339 0.84 -1.1 374,630 - Atu3339 0.84 +0.2 374,774 + +0.2 374,818 + -0.3 374,868 + Atu3340 0.11 -0.4 374,868 + Atu3340 0.11 +0.6 375,057 - Atu3340 0.33 -0.4 375,103 - Atu3340 0.39 -0.8 375,232 - Atu3340 0.54 -0.3 375,301 + Atu3340 0.63 -0.3 375,309 - Atu3340 0.64 -0.5 375,316 - Atu3340 0.65 -0.5 375,347 - Atu3340 0.68 -0.8 375,364 + Atu3340 0.70 +0.3 375,364 + Atu3340 0.70 -0.1 375,372 - Atu3340 0.71 +0.1 375,372 - Atu3340 0.71 -1.1 375,426 - Atu3340 0.78 -0.5 375,577 + -0.6 375,577 + -0.2 375,626 + -0.5 375,665 + +0.0 375,665 + +0.3 375,756 + Atu3341 0.13 -0.8
Or see this region's nucleotide sequence