Strain Fitness in Agrobacterium fabrum C58 around Atu3114

Experiment: methyl jasmonate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3112 and Atu3113 overlap by 8 nucleotidesAtu3113 and Atu3114 are separated by 72 nucleotidesAtu3114 and Atu3115 are separated by 117 nucleotides Atu3112: Atu3112 - sugar ABC transporter permease, at 121,831 to 122,706 Atu3112 Atu3113: Atu3113 - sugar ABC transporter permease, at 122,699 to 123,586 Atu3113 Atu3114: Atu3114 - sugar ABC transporter substrate-binding protein, at 123,659 to 124,948 Atu3114 Atu3115: Atu3115 - TetR family transcriptional regulator, at 125,066 to 125,764 Atu3115 Position (kb) 123 124 125Strain fitness (log2 ratio) -1 0 1 2 3at 122.746 kb on - strandat 122.753 kb on - strandat 122.785 kb on + strandat 122.813 kb on + strand, within Atu3113at 122.839 kb on - strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on + strand, within Atu3113at 122.841 kb on - strand, within Atu3113at 122.849 kb on - strand, within Atu3113at 122.849 kb on - strand, within Atu3113at 122.849 kb on - strand, within Atu3113at 122.849 kb on - strand, within Atu3113at 122.849 kb on - strand, within Atu3113at 122.849 kb on - strand, within Atu3113at 122.907 kb on + strand, within Atu3113at 122.930 kb on - strand, within Atu3113at 122.966 kb on + strand, within Atu3113at 122.971 kb on + strand, within Atu3113at 122.984 kb on - strand, within Atu3113at 123.002 kb on - strand, within Atu3113at 123.033 kb on - strand, within Atu3113at 123.235 kb on + strand, within Atu3113at 123.243 kb on - strand, within Atu3113at 123.280 kb on + strand, within Atu3113at 123.288 kb on - strand, within Atu3113at 123.288 kb on - strand, within Atu3113at 123.340 kb on - strand, within Atu3113at 123.441 kb on - strand, within Atu3113at 123.441 kb on - strand, within Atu3113at 123.511 kb on - strandat 123.993 kb on + strand, within Atu3114at 124.026 kb on - strand, within Atu3114at 124.026 kb on - strand, within Atu3114at 124.086 kb on + strand, within Atu3114at 124.140 kb on - strand, within Atu3114at 124.179 kb on + strand, within Atu3114at 124.245 kb on - strand, within Atu3114at 124.251 kb on + strand, within Atu3114at 124.264 kb on - strand, within Atu3114at 124.284 kb on - strand, within Atu3114at 124.284 kb on - strand, within Atu3114at 124.343 kb on + strand, within Atu3114at 124.348 kb on + strand, within Atu3114at 124.457 kb on - strand, within Atu3114at 124.501 kb on - strand, within Atu3114at 124.538 kb on - strand, within Atu3114at 124.550 kb on - strand, within Atu3114at 124.875 kb on + strandat 124.916 kb on + strandat 125.190 kb on - strand, within Atu3115at 125.216 kb on + strand, within Atu3115at 125.542 kb on + strand, within Atu3115at 125.592 kb on + strand, within Atu3115at 125.612 kb on + strand, within Atu3115at 125.655 kb on + strand, within Atu3115at 125.663 kb on - strand, within Atu3115at 125.717 kb on + strandat 125.717 kb on + strandat 125.717 kb on + strandat 125.725 kb on - strandat 125.725 kb on - strandat 125.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM
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122,746 - -0.8
122,753 - -0.1
122,785 + +0.2
122,813 + Atu3113 0.13 -0.4
122,839 - Atu3113 0.16 -1.2
122,841 + Atu3113 0.16 -0.1
122,841 + Atu3113 0.16 -0.2
122,841 + Atu3113 0.16 +0.4
122,841 + Atu3113 0.16 +1.1
122,841 + Atu3113 0.16 -0.2
122,841 + Atu3113 0.16 +0.2
122,841 + Atu3113 0.16 -0.7
122,841 - Atu3113 0.16 -0.4
122,849 - Atu3113 0.17 +0.7
122,849 - Atu3113 0.17 -0.1
122,849 - Atu3113 0.17 -0.0
122,849 - Atu3113 0.17 -0.4
122,849 - Atu3113 0.17 -0.3
122,849 - Atu3113 0.17 -0.5
122,907 + Atu3113 0.23 +0.7
122,930 - Atu3113 0.26 +1.9
122,966 + Atu3113 0.30 +0.5
122,971 + Atu3113 0.31 -0.3
122,984 - Atu3113 0.32 +2.9
123,002 - Atu3113 0.34 +0.1
123,033 - Atu3113 0.38 -0.4
123,235 + Atu3113 0.60 +0.3
123,243 - Atu3113 0.61 +0.1
123,280 + Atu3113 0.65 -1.0
123,288 - Atu3113 0.66 +0.2
123,288 - Atu3113 0.66 -0.9
123,340 - Atu3113 0.72 +0.1
123,441 - Atu3113 0.84 +0.3
123,441 - Atu3113 0.84 -0.0
123,511 - +0.5
123,993 + Atu3114 0.26 +0.3
124,026 - Atu3114 0.28 -0.0
124,026 - Atu3114 0.28 +0.2
124,086 + Atu3114 0.33 -1.1
124,140 - Atu3114 0.37 -0.0
124,179 + Atu3114 0.40 +0.7
124,245 - Atu3114 0.45 -0.1
124,251 + Atu3114 0.46 +1.9
124,264 - Atu3114 0.47 +0.4
124,284 - Atu3114 0.48 -1.6
124,284 - Atu3114 0.48 -0.3
124,343 + Atu3114 0.53 +1.2
124,348 + Atu3114 0.53 -1.2
124,457 - Atu3114 0.62 +0.6
124,501 - Atu3114 0.65 +0.3
124,538 - Atu3114 0.68 +0.3
124,550 - Atu3114 0.69 +1.6
124,875 + +0.1
124,916 + +0.3
125,190 - Atu3115 0.18 -0.7
125,216 + Atu3115 0.21 -0.1
125,542 + Atu3115 0.68 -0.1
125,592 + Atu3115 0.75 -0.3
125,612 + Atu3115 0.78 +0.6
125,655 + Atu3115 0.84 -0.0
125,663 - Atu3115 0.85 -1.5
125,717 + -0.7
125,717 + +1.4
125,717 + -0.3
125,725 - +0.1
125,725 - -0.3
125,903 + -0.4

Or see this region's nucleotide sequence