Strain Fitness in Agrobacterium fabrum C58 around Atu2585

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
2,559,112	-		Atu2583	0.77	-0.7
2,559,118	+		Atu2583	0.78	-0.7
2,559,118	+		Atu2583	0.78	+0.0
2,559,172	+		Atu2583	0.83	-2.0
2,559,229	-		Atu2583	0.88	-2.0
2,559,236	-		Atu2583	0.89	-2.3
2,559,244	-		Atu2583	0.89	-1.9
2,559,246	+		Atu2583	0.90	-1.3
2,559,361	-				-1.1
2,559,700	-		Atu2584	0.46	-0.6
2,559,710	+		Atu2584	0.47	-2.7
2,559,734	-		Atu2584	0.51	+0.8
2,559,848	+		Atu2584	0.66	-1.6
2,559,928	+		Atu2584	0.77	-1.8
2,559,943	+		Atu2584	0.79	+1.8
2,560,012	+		Atu2584	0.88	+0.3
2,560,022	+		Atu2584	0.89	-3.3
2,560,036	+				-2.3
2,560,074	+				-0.3
2,560,115	+				-2.3
2,560,128	-				-2.3
2,560,219	-		Atu2585	0.15	+0.3
2,560,225	-		Atu2585	0.16	-2.1
2,560,246	+		Atu2585	0.18	-2.1
2,560,275	-		Atu2585	0.22	+0.3
2,560,386	+		Atu2585	0.35	-1.7
2,560,389	-		Atu2585	0.35	-1.6
2,560,391	+		Atu2585	0.36	-2.9
2,560,437	-		Atu2585	0.41	-0.2
2,560,459	+		Atu2585	0.44	-1.2
2,560,555	+		Atu2585	0.55	-0.7
2,560,641	+		Atu2585	0.65	-1.4
2,560,674	+		Atu2585	0.69	-0.5
2,560,674	+		Atu2585	0.69	-2.7
2,560,675	+		Atu2585	0.69	-1.6
2,560,744	-		Atu2585	0.78	-1.2
2,560,777	+		Atu2585	0.82	-2.3
2,560,866	-				-1.3
2,560,908	+				-1.9
2,560,916	-				-4.2
2,560,937	-				-0.2
2,561,022	+				-1.8
2,561,187	-				-0.9
2,561,201	+				-1.8
2,561,209	-				-1.2
2,561,232	-				+1.0
2,561,235	+				-0.5
2,561,235	+				-0.2
2,561,287	-				-0.6
2,561,446	+				-0.3
2,561,521	+		Atu2586	0.14	+0.7
2,561,593	+		Atu2586	0.17	+0.7
2,561,617	+		Atu2586	0.19	-0.2
2,561,719	-		Atu2586	0.24	-0.1
2,561,729	+		Atu2586	0.25	+0.8
2,561,762	-		Atu2586	0.26	-0.2
2,561,796	+		Atu2586	0.28	+0.0
2,561,801	+		Atu2586	0.28	+0.3
2,561,854	+		Atu2586	0.31	-0.4
2,561,862	-		Atu2586	0.32	-0.1
2,561,862	-		Atu2586	0.32	+0.6
2,561,868	-		Atu2586	0.32	+0.5
2,561,897	+		Atu2586	0.33	-0.7
2,561,897	+		Atu2586	0.33	-0.2
2,561,905	-		Atu2586	0.34	-0.5