Strain Fitness in Agrobacterium fabrum C58 around Atu2548

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
2,519,116	+				+0.8
2,519,124	-				-0.8
2,519,124	-				-0.4
2,519,197	+				-0.2
2,519,246	+				+0.2
2,519,278	+				+0.5
2,519,286	-				-0.4
2,519,286	-				-0.4
2,519,288	+				+0.5
2,519,332	+		Atu2548	0.13	+0.9
2,519,337	+		Atu2548	0.13	+0.3
2,519,368	+		Atu2548	0.17	+0.7
2,519,401	-		Atu2548	0.20	+0.5
2,519,406	-		Atu2548	0.21	+0.2
2,519,408	+		Atu2548	0.21	+0.3
2,519,430	+		Atu2548	0.23	-0.3
2,519,486	-		Atu2548	0.29	-1.0
2,519,494	+		Atu2548	0.30	+0.5
2,519,525	+		Atu2548	0.33	+0.8
2,519,533	+		Atu2548	0.34	-0.1
2,519,547	+		Atu2548	0.35	-0.0
2,519,549	+		Atu2548	0.36	+1.0
2,519,559	+		Atu2548	0.37	+0.5
2,519,565	+		Atu2548	0.37	-0.1
2,519,570	+		Atu2548	0.38	+0.2
2,519,578	-		Atu2548	0.39	+1.1
2,519,608	+		Atu2548	0.42	+0.8
2,519,681	-		Atu2548	0.49	+0.4
2,519,692	-		Atu2548	0.51	+0.1
2,519,725	+		Atu2548	0.54	+0.7
2,519,733	-		Atu2548	0.55	-0.2
2,519,735	+		Atu2548	0.55	+0.2
2,519,748	-		Atu2548	0.56	+0.5
2,519,756	+		Atu2548	0.57	+1.6
2,519,756	+		Atu2548	0.57	+0.4
2,519,756	+		Atu2548	0.57	+0.1
2,519,756	+		Atu2548	0.57	+0.3
2,519,764	-		Atu2548	0.58	-0.5
2,519,764	-		Atu2548	0.58	+0.4
2,519,764	-		Atu2548	0.58	-0.1
2,519,774	-		Atu2548	0.59	+0.1
2,519,799	-		Atu2548	0.62	+0.6
2,519,799	-		Atu2548	0.62	+0.5
2,519,877	-		Atu2548	0.70	+1.5
2,519,963	+		Atu2548	0.79	+0.4
2,519,990	+		Atu2548	0.82	-0.8
2,520,038	-		Atu2548	0.87	+0.5
2,520,044	+		Atu2548	0.88	+0.2
2,520,044	+		Atu2548	0.88	+0.7
2,520,044	+		Atu2548	0.88	+0.2
2,520,052	-		Atu2548	0.88	+0.4
2,520,052	-		Atu2548	0.88	+0.1
2,520,098	-				+0.2
2,520,133	+				+0.6
2,520,133	+				+0.9
2,520,155	+				+0.2
2,520,155	+				+0.6
2,520,155	+				-0.3
2,520,163	-				-0.9
2,520,344	-		Atu2549	0.27	+0.2
2,520,347	-		Atu2549	0.28	+0.2
2,520,349	-		Atu2549	0.28	-0.1
2,520,434	+		Atu2549	0.41	+0.9
2,520,457	+		Atu2549	0.44	+1.4
2,520,475	+		Atu2549	0.47	+1.2
2,520,504	+		Atu2549	0.51	+0.1
2,520,512	-		Atu2549	0.53	+0.4
2,520,554	-		Atu2549	0.59	+0.5
2,520,560	-		Atu2549	0.60	+0.6
2,520,562	+		Atu2549	0.60	+0.7
2,520,593	+		Atu2549	0.65	+0.9
2,520,635	+		Atu2549	0.71	+0.1
2,520,640	+		Atu2549	0.72	+0.2
2,520,651	+		Atu2549	0.74	+0.2
2,520,707	+		Atu2549	0.82	+0.6
2,520,710	-		Atu2549	0.83	+1.1
2,520,711	+		Atu2549	0.83	+0.1
2,520,806	-				-1.3
2,520,866	+				-5.1
2,520,866	+				-4.2
2,520,874	-				-3.3
2,520,874	-				-0.2
2,520,881	-				-3.7
2,520,897	+				-2.5
2,520,926	+				-3.2
2,520,942	-				-4.1