Strain Fitness in Agrobacterium fabrum C58 around Atu2098

Experiment: methyl jasmonate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2097 and Atu2098 are separated by 23 nucleotidesAtu2098 and Atu2099 overlap by 4 nucleotides Atu2097: Atu2097 - phospho-N-acetylmuramoyl-pentapeptide- transferase, at 2,061,155 to 2,062,255 Atu2097 Atu2098: Atu2098 - UDP-MurNAc-pentapeptide synthetase, at 2,062,279 to 2,063,712 Atu2098 Atu2099: Atu2099 - UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase, at 2,063,709 to 2,065,178 Atu2099 Position (kb) 2062 2063 2064Strain fitness (log2 ratio) -1 0 1at 2063.751 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM
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2,063,751 - +0.5

Or see this region's nucleotide sequence