Strain Fitness in Agrobacterium fabrum C58 around Atu2089
Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methyl jasmonate 5 mM |
---|---|---|---|---|---|
remove | |||||
2,052,447 | + | -0.4 | |||
2,052,485 | + | +0.1 | |||
2,052,525 | - | +0.0 | |||
2,052,840 | + | Atu2090 | 0.12 | +1.1 | |
2,052,851 | + | Atu2090 | 0.13 | -1.2 | |
2,052,980 | + | Atu2090 | 0.23 | +0.0 | |
2,052,992 | + | Atu2090 | 0.24 | -0.5 | |
2,052,995 | - | Atu2090 | 0.24 | +0.2 | |
2,052,997 | + | Atu2090 | 0.24 | -0.2 | |
2,053,005 | - | Atu2090 | 0.25 | -0.3 | |
2,053,044 | - | Atu2090 | 0.28 | -1.0 | |
2,053,113 | + | Atu2090 | 0.33 | -0.5 | |
2,053,128 | + | Atu2090 | 0.34 | +0.3 | |
2,053,131 | - | Atu2090 | 0.34 | -0.3 |
Or see this region's nucleotide sequence