Strain Fitness in Agrobacterium fabrum C58 around Atu2044

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
2,002,180	+		Atu2043	0.50	-1.4
2,002,195	+		Atu2043	0.51	-1.5
2,002,203	-		Atu2043	0.52	+0.0
2,002,276	+		Atu2043	0.56	-2.1
2,002,314	-		Atu2043	0.59	-2.5
2,002,464	+		Atu2043	0.68	-0.6
2,002,544	-		Atu2043	0.74	-2.2
2,002,757	-		Atu2043	0.87	-1.2
2,002,761	+		Atu2043	0.88	-2.1
2,002,885	+				+0.0
2,002,906	-				-0.5
2,002,929	+				-0.9
2,002,940	+				-1.3
2,002,974	+				-0.8
2,002,992	-				+0.2
2,003,007	-				-1.5
2,003,071	+				-0.1
2,003,072	-				+0.7
2,003,079	-				-1.6
2,003,086	-				-0.8
2,003,169	-				+0.2
2,003,174	-				-0.1
2,003,253	-		Atu2044	0.12	-1.0
2,003,395	-		Atu2044	0.27	+1.2
2,003,441	-		Atu2044	0.32	-1.3
2,003,452	+		Atu2044	0.33	-0.2
2,003,524	-		Atu2044	0.41	+0.2
2,003,625	-		Atu2044	0.52	+0.2
2,003,737	-		Atu2044	0.64	+0.0
2,003,951	-		Atu2044	0.87	+0.9
2,003,956	-		Atu2044	0.88	+0.7
2,004,177	+				-0.5
2,004,233	-		Atu2045	0.15	-0.2
2,004,243	-		Atu2045	0.16	-0.3
2,004,345	-		Atu2045	0.25	-0.2
2,004,508	-		Atu2045	0.39	-0.1
2,004,696	-		Atu2045	0.56	-0.3
2,004,916	+		Atu2045	0.76	-2.3