Strain Fitness in Agrobacterium fabrum C58 around Atu1882

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,861,717	+				-0.4
1,861,833	+		Atu1881	0.14	-0.6
1,861,841	-		Atu1881	0.15	+0.0
1,861,865	-		Atu1881	0.18	+0.1
1,861,918	+		Atu1881	0.25	+0.7
1,861,918	+		Atu1881	0.25	+0.3
1,861,926	-		Atu1881	0.26	+0.2
1,861,928	+		Atu1881	0.26	-0.4
1,861,955	+		Atu1881	0.29	+0.2
1,861,956	+		Atu1881	0.29	+0.8
1,861,975	+		Atu1881	0.32	-0.3
1,862,036	-		Atu1881	0.39	+1.6
1,862,057	-		Atu1881	0.41	-0.7
1,862,077	+		Atu1881	0.44	+0.4
1,862,142	+		Atu1881	0.52	-0.4
1,862,182	+		Atu1881	0.56	+0.2
1,862,245	-		Atu1881	0.64	-0.3
1,862,359	-		Atu1881	0.78	-0.2
1,862,385	+		Atu1881	0.81	+0.4
1,862,554	+				-0.0
1,862,628	-				+1.1
1,862,643	-				-0.1
1,862,645	+				-0.1
1,862,666	-				-0.1
1,862,807	-		Atu1882	0.36	+0.3
1,862,807	-		Atu1882	0.36	-1.6
1,862,809	+		Atu1882	0.36	+1.1
1,862,829	-		Atu1882	0.44	+0.1
1,862,892	+		Atu1882	0.67	+0.3
1,862,934	+		Atu1882	0.83	+0.1
1,863,019	+				+0.4
1,863,039	-				+0.0
1,863,105	+				-0.2
1,863,105	+				+0.5
1,863,105	+				+0.6
1,863,105	+				-0.9
1,863,105	+				+1.0
1,863,105	+				-0.1
1,863,105	+				+0.6
1,863,107	+				-1.1
1,863,107	+				-0.7
1,863,113	-				+0.2
1,863,113	-				+0.0
1,863,113	-				+0.2
1,863,113	-				-0.6
1,863,113	-				-0.5
1,863,200	-		Atu1883	0.17	+0.8
1,863,210	+		Atu1883	0.18	+0.7
1,863,294	+		Atu1883	0.28	-1.2
1,863,337	-		Atu1883	0.33	-0.4
1,863,339	+		Atu1883	0.33	-0.9
1,863,347	-		Atu1883	0.34	+0.0
1,863,370	+		Atu1883	0.37	+0.0
1,863,378	-		Atu1883	0.38	+0.8
1,863,378	-		Atu1883	0.38	-0.4
1,863,378	-		Atu1883	0.38	+0.1
1,863,384	-		Atu1883	0.39	-0.0
1,863,603	-		Atu1883	0.65	+0.1
1,863,605	+		Atu1883	0.66	-0.5
1,863,610	+		Atu1883	0.66	+0.6
1,863,613	-		Atu1883	0.67	-0.1
1,863,697	+		Atu1883	0.77	+0.4
1,863,727	-		Atu1883	0.80	-0.1
1,863,768	+		Atu1883	0.85	-0.3
1,863,817	+				-0.2
1,863,864	-				-0.0
1,863,883	-				-0.0