Strain Fitness in Agrobacterium fabrum C58 around Atu1799

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,784,581	+				-0.6
1,784,589	-				-0.2
1,784,638	+		Atu1798	0.16	+0.2
1,784,645	+		Atu1798	0.17	-1.1
1,784,653	-		Atu1798	0.19	-0.2
1,784,660	-		Atu1798	0.20	+0.2
1,784,693	-		Atu1798	0.26	-0.6
1,784,713	-		Atu1798	0.30	-0.0
1,784,732	+		Atu1798	0.33	+0.0
1,784,736	-		Atu1798	0.34	-0.1
1,784,878	-		Atu1798	0.59	-0.1
1,784,880	-		Atu1798	0.59	-0.0
1,784,934	+		Atu1798	0.69	-0.2
1,784,942	-		Atu1798	0.71	+0.1
1,784,998	-		Atu1798	0.81	-0.4
1,785,005	-		Atu1798	0.82	-0.2
1,785,089	+				+0.1
1,785,097	-				+0.4
1,785,198	+				-0.1
1,785,198	+				-0.9
1,785,206	-				-2.0
1,785,248	-				-0.0
1,785,385	-				-0.1
1,785,385	-				+1.1
1,785,385	-				+1.2
1,785,454	+				-0.0
1,785,462	-				+0.4
1,785,462	-				-0.2
1,785,462	-				-0.3
1,785,546	-				+1.4
1,785,673	+		Atu1799	0.19	+0.4
1,785,692	-		Atu1799	0.22	-0.3
1,785,708	-		Atu1799	0.24	+0.1
1,785,740	+		Atu1799	0.28	-0.2
1,785,781	-		Atu1799	0.34	+0.2
1,785,786	-		Atu1799	0.35	+1.6
1,785,808	-		Atu1799	0.38	+0.6
1,785,813	-		Atu1799	0.38	+0.6
1,785,931	+		Atu1799	0.54	+0.3
1,785,931	+		Atu1799	0.54	+0.0
1,785,937	+		Atu1799	0.55	+2.6
1,785,937	+		Atu1799	0.55	+0.3
1,785,937	+		Atu1799	0.55	+1.1
1,785,945	-		Atu1799	0.56	+0.4
1,785,945	-		Atu1799	0.56	+0.4
1,786,061	-		Atu1799	0.72	+0.4
1,786,061	-		Atu1799	0.72	+0.1
1,786,081	+		Atu1799	0.74	-0.1
1,786,091	+		Atu1799	0.76	-1.4
1,786,091	+		Atu1799	0.76	+0.5
1,786,091	+		Atu1799	0.76	+0.0
1,786,154	+		Atu1799	0.84	+0.5
1,786,160	-		Atu1799	0.85	+0.4
1,786,167	-		Atu1799	0.86	+1.7
1,786,178	-		Atu1799	0.87	+1.0
1,786,258	-				+0.5
1,786,485	+				-0.2
1,786,485	+				-0.8
1,786,493	-				-1.0
1,786,493	-				-0.8
1,786,525	+		Atu1800	0.10	-0.3
1,786,586	+		Atu1800	0.16	-0.3
1,786,601	-		Atu1800	0.17	-1.2
1,786,613	-		Atu1800	0.18	-1.1
1,786,637	-		Atu1800	0.20	-0.3
1,786,652	+		Atu1800	0.21	-1.6
1,786,654	+		Atu1800	0.22	+0.2
1,786,676	-		Atu1800	0.23	+0.1
1,786,789	-		Atu1800	0.33	-0.4
1,786,793	+		Atu1800	0.34	+0.9
1,786,812	-		Atu1800	0.35	+0.2
1,786,822	-		Atu1800	0.36	-0.7
1,786,874	-		Atu1800	0.41	-0.4
1,786,874	-		Atu1800	0.41	-0.2
1,786,926	-		Atu1800	0.45	-0.0
1,787,017	+		Atu1800	0.53	-0.4
1,787,052	+		Atu1800	0.56	-0.3
1,787,090	+		Atu1800	0.59	-0.9
1,787,175	+		Atu1800	0.67	-0.2
1,787,209	+		Atu1800	0.70	-0.2
1,787,217	-		Atu1800	0.70	+0.9
1,787,237	+		Atu1800	0.72	-0.7
1,787,250	-		Atu1800	0.73	-0.4
1,787,263	-		Atu1800	0.74	-0.1