Strain Fitness in Agrobacterium fabrum C58 around Atu1739

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,724,975	+		Atu1738	0.57	-0.5
1,724,991	+		Atu1738	0.58	+1.0
1,725,089	+		Atu1738	0.64	-1.2
1,725,089	+		Atu1738	0.64	-0.6
1,725,089	+		Atu1738	0.64	+0.5
1,725,097	-		Atu1738	0.64	-0.5
1,725,097	-		Atu1738	0.64	-0.3
1,725,160	-		Atu1738	0.68	-0.7
1,725,197	-		Atu1738	0.70	-0.4
1,725,257	+		Atu1738	0.74	+0.1
1,725,287	-		Atu1738	0.75	+0.7
1,725,305	+		Atu1738	0.76	-0.5
1,725,353	-		Atu1738	0.79	-0.1
1,725,416	+		Atu1738	0.83	-0.8
1,725,427	-		Atu1738	0.84	+0.0
1,725,518	-		Atu1738	0.89	-0.3
1,725,570	-				+0.1
1,725,635	+				-0.1
1,725,735	+				-0.4
1,725,771	-				-0.9
1,725,797	-				+0.0
1,725,797	-				+0.6
1,725,850	+				+0.0
1,725,850	+				+0.0
1,725,858	-				-0.0
1,725,911	+				-0.1
1,725,946	+				-0.6
1,725,960	+				-1.6
1,726,561	-		Atu1739	0.50	-1.6
1,726,592	-		Atu1739	0.52	-0.7
1,726,725	+		Atu1739	0.63	-1.2
1,726,742	-		Atu1739	0.64	-1.9
1,726,798	+		Atu1739	0.69	-1.3
1,726,847	-		Atu1739	0.73	+0.6
1,726,972	-		Atu1739	0.83	-2.1
1,726,998	+		Atu1739	0.85	-2.7
1,727,191	+				-1.4
1,727,191	+				-0.7
1,727,238	+				-1.0
1,727,405	-				-0.2
1,727,497	+				-0.6
1,727,554	+				-0.5
1,727,554	+				-0.7
1,727,554	+				-1.4
1,727,562	-				+0.4
1,727,607	-				+0.5
1,727,607	-				-0.2
1,727,755	+		Atu1740	0.37	+0.5
1,727,787	-		Atu1740	0.44	-0.1
1,727,812	+		Atu1740	0.50	+0.4
1,727,819	+		Atu1740	0.51	-0.2
1,727,839	+		Atu1740	0.55	+0.0
1,727,847	-		Atu1740	0.57	-0.1
1,727,907	-		Atu1740	0.70	+1.3
1,727,979	-		Atu1740	0.86	-0.4
1,727,979	-		Atu1740	0.86	-0.2
1,727,981	+		Atu1740	0.87	+0.6
1,727,991	+		Atu1740	0.89	-0.2
1,728,092	+				-0.1
1,728,102	-				-0.4
1,728,139	+				-0.8
1,728,139	+				+0.1