Strain Fitness in Agrobacterium fabrum C58 around Atu1645

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,627,304	+		Atu1643	0.29	+0.0
1,627,334	-		Atu1643	0.35	+0.3
1,627,334	-		Atu1643	0.35	-0.0
1,627,386	+		Atu1643	0.47	+0.3
1,627,427	+		Atu1643	0.57	-0.6
1,627,499	-		Atu1643	0.73	-1.0
1,627,502	+		Atu1643	0.74	-0.4
1,627,524	-		Atu1643	0.79	-0.2
1,627,526	+		Atu1643	0.79	-2.9
1,627,526	+		Atu1643	0.79	+0.0
1,627,526	+		Atu1643	0.79	+0.1
1,627,534	-		Atu1643	0.81	+0.4
1,627,534	-		Atu1643	0.81	+0.6
1,627,534	-		Atu1643	0.81	+1.6
1,627,534	-		Atu1643	0.81	-0.3
1,627,544	-		Atu1643	0.83	-0.3
1,627,544	-		Atu1643	0.83	-0.2
1,627,599	+				-0.4
1,627,673	+				+0.2
1,627,727	+				-1.4
1,627,766	+		Atu1644	0.15	-1.9
1,627,822	-		Atu1644	0.24	-2.5
1,627,995	-		Atu1644	0.53	-1.7
1,628,200	+		Atu1644	0.87	-1.7
1,628,242	-				-1.0
1,628,264	+				-0.4
1,628,290	-				-0.5
1,628,771	+		Atu1645	0.35	-3.2
1,628,771	+		Atu1645	0.35	-2.4
1,628,771	+		Atu1645	0.35	-1.5
1,628,774	-		Atu1645	0.35	-2.1
1,628,774	-		Atu1645	0.35	-1.0
1,628,779	-		Atu1645	0.35	-0.9
1,628,805	-		Atu1645	0.37	-1.6
1,628,836	-		Atu1645	0.39	-3.4
1,628,869	+		Atu1645	0.42	-0.7
1,628,869	+		Atu1645	0.42	-1.3
1,628,869	+		Atu1645	0.42	-2.6
1,628,898	-		Atu1645	0.44	-0.7
1,629,033	+		Atu1645	0.54	-2.8
1,629,040	-		Atu1645	0.54	-0.2
1,629,147	+		Atu1645	0.62	-1.8
1,629,289	+		Atu1645	0.72	-0.7
1,629,297	-		Atu1645	0.73	-3.2
1,629,297	-		Atu1645	0.73	-1.7
1,629,403	+		Atu1645	0.81	-0.7
1,629,529	+		Atu1645	0.90	-3.0
1,629,543	+				-2.2
1,629,758	+				-2.4
1,629,884	+		Atu1646	0.25	-2.8
1,629,941	+		Atu1646	0.32	-0.8
1,630,015	+		Atu1646	0.41	-1.8
1,630,023	-		Atu1646	0.42	+1.0
1,630,127	+		Atu1646	0.54	-2.1
1,630,185	-		Atu1646	0.61	-3.2
1,630,195	+		Atu1646	0.62	-1.6
1,630,203	-		Atu1646	0.63	-2.2
1,630,229	-		Atu1646	0.66	-0.4
1,630,330	+		Atu1646	0.78	-1.6
1,630,649	-		Atu1647	0.11	+0.0
1,630,657	-		Atu1647	0.12	-1.6
1,630,657	-		Atu1647	0.12	-3.3