Strain Fitness in Agrobacterium fabrum C58 around Atu1341

Experiment: methyl jasmonate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1340 and Atu1341 are separated by 316 nucleotidesAtu1341 and Atu1342 are separated by 201 nucleotides Atu1340: Atu1340 - N-acetylmuramoyl-L-alanine amidase, at 1,327,380 to 1,328,639 Atu1340 Atu1341: Atu1341 - penicillin-binding protein 1a, at 1,328,956 to 1,331,403 Atu1341 Atu1342: Atu1342 - peptide chain release factor 2, at 1,331,605 to 1,332,633 Atu1342 Position (kb) 1328 1329 1330 1331 1332Strain fitness (log2 ratio) -1 0 1at 1328.601 kb on + strandat 1328.601 kb on + strandat 1328.667 kb on + strandat 1328.694 kb on + strandat 1328.796 kb on - strandat 1328.802 kb on - strandat 1328.863 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM
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1,328,601 + -0.5
1,328,601 + -0.2
1,328,667 + -0.1
1,328,694 + -0.6
1,328,796 - +0.9
1,328,802 - +0.3
1,328,863 + -0.9

Or see this region's nucleotide sequence