Strain Fitness in Agrobacterium fabrum C58 around Atu1221

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,213,976	+		Atu1219	0.84	+0.7
1,213,994	-				+0.1
1,214,112	-				+0.9
1,214,130	+				+1.1
1,214,130	+				-0.1
1,214,138	-				-0.8
1,214,138	-				+0.8
1,214,188	-				+0.1
1,214,268	+		Atu1220	0.17	+0.5
1,214,272	-		Atu1220	0.18	-0.5
1,214,357	-		Atu1220	0.33	-0.1
1,214,435	-		Atu1220	0.47	-0.4
1,214,443	+		Atu1220	0.49	+0.4
1,214,461	-		Atu1220	0.52	-0.0
1,214,550	+		Atu1220	0.68	+0.2
1,214,550	+		Atu1220	0.68	+0.5
1,214,563	-		Atu1220	0.70	-0.5
1,214,641	-		Atu1220	0.84	+0.2
1,214,722	-				+0.0
1,214,821	+				-0.7
1,214,990	+		Atu1221	0.33	+0.4
1,215,000	+		Atu1221	0.35	+0.1
1,215,015	+		Atu1221	0.39	+0.0
1,215,017	-		Atu1221	0.39	+0.3
1,215,059	+		Atu1221	0.49	+0.2
1,215,067	-		Atu1221	0.50	+0.3
1,215,129	-		Atu1221	0.64	+0.4
1,215,211	-		Atu1221	0.83	+0.4
1,215,322	+				+0.5
1,215,330	-				-0.4
1,215,330	-				+0.0
1,215,349	-				-0.1
1,215,437	-				+0.7
1,215,437	-				-0.6
1,215,437	-				+0.3
1,215,512	+		Atu1222	0.12	-0.8
1,215,520	-		Atu1222	0.13	-0.0
1,215,544	+		Atu1222	0.16	-0.4
1,215,557	+		Atu1222	0.18	-0.0
1,215,609	+		Atu1222	0.25	+0.0
1,215,614	+		Atu1222	0.26	-0.1
1,215,617	-		Atu1222	0.26	-0.1
1,215,625	+		Atu1222	0.27	+0.0
1,215,769	+		Atu1222	0.47	-0.1
1,215,769	+		Atu1222	0.47	-0.8
1,215,769	+		Atu1222	0.47	+0.1
1,215,769	+		Atu1222	0.47	+0.0
1,215,794	+		Atu1222	0.51	-0.4
1,215,802	-		Atu1222	0.52	+0.0
1,215,802	-		Atu1222	0.52	-0.8
1,215,804	-		Atu1222	0.52	+0.5
1,216,024	+		Atu1222	0.82	-0.1
1,216,060	+		Atu1222	0.87	-0.5
1,216,078	-		Atu1222	0.89	-0.2
1,216,078	-		Atu1222	0.89	+1.0
1,216,110	+				+0.3
1,216,110	+				+0.9
1,216,167	+				-0.3
1,216,175	-				+0.1
1,216,175	-				-0.1