Strain Fitness in Agrobacterium fabrum C58 around Atu1164

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
1,157,713	-		Atu1163	0.34	-2.3
1,157,780	-		Atu1163	0.47	-0.6
1,158,068	+				-0.7
1,158,068	+				-0.2
1,158,076	-				-0.1
1,158,186	-				-0.1
1,158,186	-				-0.0
1,158,189	-				-0.1
1,158,189	-				+0.7
1,158,210	-				-0.1
1,158,228	+				+0.0
1,158,243	+				+0.2
1,158,246	-				+0.5
1,158,329	+				+1.1
1,158,376	+				+0.3
1,158,384	-				-0.2
1,158,411	-				+0.8
1,158,450	+				+1.2
1,158,498	-				+0.6
1,158,540	+				+0.3
1,158,548	-				+1.9
1,158,550	+				+0.7
1,158,594	-		Atu1164	0.13	+0.4
1,158,711	+		Atu1164	0.22	+0.7
1,158,721	+		Atu1164	0.22	-0.1
1,158,757	+		Atu1164	0.25	-0.3
1,158,873	+		Atu1164	0.34	-0.0
1,158,881	-		Atu1164	0.34	-0.5
1,158,949	-		Atu1164	0.39	+0.1
1,158,962	+		Atu1164	0.40	+0.1
1,158,962	+		Atu1164	0.40	+0.4
1,159,005	-		Atu1164	0.44	+0.4
1,159,081	-		Atu1164	0.49	+0.7
1,159,123	+		Atu1164	0.53	+0.2
1,159,153	-		Atu1164	0.55	-0.1
1,159,339	-		Atu1164	0.69	+1.4
1,159,340	+		Atu1164	0.69	+0.5
1,159,360	-		Atu1164	0.70	+0.7
1,159,438	+		Atu1164	0.76	+0.5
1,159,464	+		Atu1164	0.78	+0.3
1,159,499	+		Atu1164	0.81	+0.2
1,159,499	+		Atu1164	0.81	-0.3
1,159,578	-		Atu1164	0.87	+0.6
1,159,620	+		Atu1164	0.90	+0.3
1,159,682	+				+0.7
1,159,688	+				+0.3
1,159,793	+				+0.1
1,159,806	-				-0.5
1,159,837	+				+0.1
1,159,837	-				-0.1
1,159,898	+				+0.6
1,159,911	-				+0.0
1,159,912	-				-0.0
1,159,929	-				+0.8