Strain Fitness in Agrobacterium fabrum C58 around Atu1103
Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methyl jasmonate 5 mM |
---|---|---|---|---|---|
remove | |||||
1,091,178 | - | Atu1102 | 0.12 | -0.2 | |
1,091,368 | - | Atu1102 | 0.42 | +1.0 | |
1,091,421 | - | Atu1102 | 0.51 | +0.4 | |
1,091,457 | + | Atu1102 | 0.57 | +0.2 | |
1,091,481 | + | Atu1102 | 0.60 | -0.0 | |
1,091,587 | + | Atu1102 | 0.77 | -0.4 | |
1,091,742 | + | +0.1 | |||
1,091,742 | + | -0.3 | |||
1,091,814 | - | +0.2 | |||
1,091,959 | - | Atu1103 | 0.19 | +0.6 | |
1,091,988 | + | Atu1103 | 0.23 | +0.9 | |
1,092,357 | - | Atu1103 | 0.67 | +0.1 | |
1,092,659 | - | +0.2 | |||
1,093,157 | - | Atu1104 | 0.52 | +0.6 |
Or see this region's nucleotide sequence