Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0784 and Atu0785 overlap by 4 nucleotides Atu0785 and Atu0786 are separated by 93 nucleotides Atu0786 and Atu0787 are separated by 21 nucleotides
Atu0784: Atu0784 - hypothetical protein, at 779,594 to 782,509
Atu0784
Atu0785: Atu0785 - ribosomal-protein (S5)-alanine N-acetyltransferase, at 782,506 to 783,105
Atu0785
Atu0786: Atu0786 - peptidase, family M16, at 783,199 to 784,497
Atu0786
Atu0787: Atu0787 - threonine synthase, at 784,519 to 786,090
Atu0787
Position (kb) 783
784
785 Strain fitness (log2 ratio) -1
0
1
2 at 782.518 kb on - strand at 782.757 kb on - strand, within Atu0785 at 782.779 kb on - strand, within Atu0785 at 782.794 kb on + strand, within Atu0785 at 782.797 kb on - strand, within Atu0785 at 782.802 kb on - strand, within Atu0785 at 783.046 kb on - strand at 783.051 kb on + strand at 783.064 kb on - strand at 783.066 kb on + strand at 783.125 kb on - strand at 783.210 kb on + strand at 783.210 kb on + strand at 783.337 kb on + strand, within Atu0786 at 783.682 kb on - strand, within Atu0786 at 783.860 kb on - strand, within Atu0786 at 784.187 kb on - strand, within Atu0786 at 784.212 kb on - strand, within Atu0786 at 784.244 kb on - strand, within Atu0786 at 784.341 kb on - strand, within Atu0786 at 784.485 kb on + strand at 784.491 kb on + strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.505 kb on - strand at 784.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 782,518 - -0.2 782,757 - Atu0785 0.42 -0.2 782,779 - Atu0785 0.46 +0.2 782,794 + Atu0785 0.48 +0.2 782,797 - Atu0785 0.48 +0.2 782,802 - Atu0785 0.49 +0.4 783,046 - +0.3 783,051 + -0.2 783,064 - -0.3 783,066 + -0.4 783,125 - +0.4 783,210 + -1.0 783,210 + +0.4 783,337 + Atu0786 0.11 +1.3 783,682 - Atu0786 0.37 +0.8 783,860 - Atu0786 0.51 -0.4 784,187 - Atu0786 0.76 +0.1 784,212 - Atu0786 0.78 +1.3 784,244 - Atu0786 0.80 +0.7 784,341 - Atu0786 0.88 +0.2 784,485 + +2.0 784,491 + +0.3 784,493 - -0.4 784,493 - -0.8 784,493 - -0.0 784,493 - +0.1 784,505 - +0.4 784,527 - +0.1
Or see this region's nucleotide sequence