Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0702 and Atu0703 are separated by 4 nucleotides Atu0703 and Atu0704 are separated by 15 nucleotides Atu0704 and Atu0705 overlap by 1 nucleotides
Atu0702: Atu0702 - calcium-binding protein, regucalcin, at 702,702 to 703,589
Atu0702
Atu0703: Atu0703 - keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase, at 703,594 to 704,223
Atu0703
Atu0704: Atu0704 - 2-dehydro-3-deoxygalactonate kinase, at 704,239 to 705,153
Atu0704
Atu0705: Atu0705 - 3-oxoacyl-(acyl carrier protein) reductase, at 705,153 to 705,926
Atu0705
Position (kb) 703
704
705 Strain fitness (log2 ratio) -1
0
1 at 702.596 kb on - strand at 702.625 kb on - strand at 702.709 kb on - strand at 702.724 kb on + strand at 702.764 kb on - strand at 702.947 kb on + strand, within Atu0702 at 702.992 kb on - strand, within Atu0702 at 703.028 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.083 kb on - strand, within Atu0702 at 703.107 kb on - strand, within Atu0702 at 703.170 kb on - strand, within Atu0702 at 703.231 kb on + strand, within Atu0702 at 703.376 kb on + strand, within Atu0702 at 703.483 kb on - strand, within Atu0702 at 703.590 kb on + strand at 703.658 kb on - strand, within Atu0703 at 703.678 kb on - strand, within Atu0703 at 703.858 kb on - strand, within Atu0703 at 704.131 kb on - strand, within Atu0703 at 704.336 kb on + strand, within Atu0704 at 704.336 kb on + strand, within Atu0704 at 704.358 kb on + strand, within Atu0704 at 704.474 kb on - strand, within Atu0704 at 704.484 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.541 kb on - strand, within Atu0704 at 704.571 kb on - strand, within Atu0704 at 704.603 kb on - strand, within Atu0704 at 704.622 kb on + strand, within Atu0704 at 704.651 kb on + strand, within Atu0704 at 704.693 kb on - strand, within Atu0704 at 704.747 kb on + strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.755 kb on - strand, within Atu0704 at 704.804 kb on + strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.812 kb on - strand, within Atu0704 at 704.916 kb on - strand, within Atu0704 at 704.917 kb on - strand, within Atu0704 at 704.951 kb on + strand, within Atu0704 at 704.998 kb on - strand, within Atu0704 at 705.125 kb on - strand at 705.131 kb on - strand at 705.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 702,596 - -0.2 702,625 - +0.1 702,709 - +0.1 702,724 + +0.3 702,764 - +1.1 702,947 + Atu0702 0.28 +0.2 702,992 - Atu0702 0.33 +0.3 703,028 - Atu0702 0.37 +0.4 703,083 - Atu0702 0.43 -0.9 703,083 - Atu0702 0.43 +0.3 703,107 - Atu0702 0.46 +0.1 703,170 - Atu0702 0.53 -0.1 703,231 + Atu0702 0.60 -0.4 703,376 + Atu0702 0.76 +0.3 703,483 - Atu0702 0.88 +0.2 703,590 + +0.1 703,658 - Atu0703 0.10 +0.5 703,678 - Atu0703 0.13 +0.0 703,858 - Atu0703 0.42 +0.4 704,131 - Atu0703 0.85 +0.9 704,336 + Atu0704 0.11 -0.0 704,336 + Atu0704 0.11 -0.4 704,358 + Atu0704 0.13 +0.1 704,474 - Atu0704 0.26 -0.2 704,484 - Atu0704 0.27 +0.6 704,541 - Atu0704 0.33 +0.1 704,541 - Atu0704 0.33 -0.3 704,571 - Atu0704 0.36 +0.6 704,603 - Atu0704 0.40 -0.1 704,622 + Atu0704 0.42 +0.0 704,651 + Atu0704 0.45 -0.1 704,693 - Atu0704 0.50 +0.2 704,747 + Atu0704 0.56 -0.0 704,755 - Atu0704 0.56 +0.5 704,755 - Atu0704 0.56 -0.7 704,804 + Atu0704 0.62 +0.2 704,812 - Atu0704 0.63 -0.3 704,812 - Atu0704 0.63 +0.2 704,812 - Atu0704 0.63 -0.5 704,812 - Atu0704 0.63 +0.4 704,916 - Atu0704 0.74 -0.3 704,917 - Atu0704 0.74 -0.1 704,951 + Atu0704 0.78 -0.4 704,998 - Atu0704 0.83 +0.2 705,125 - -0.8 705,131 - +0.5 705,151 + +0.1
Or see this region's nucleotide sequence