Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0592 and Atu0593 are separated by 1 nucleotides Atu0593 and Atu0594 are separated by 37 nucleotides
Atu0592: Atu0592 - ABC transporter, membrane spanning protein, at 576,114 to 577,034
Atu0592
Atu0593: Atu0593 - ABC transporter, membrane spanning protein, at 577,036 to 578,196
Atu0593
Atu0594: Atu0594 - alpha-glucosidase, at 578,234 to 579,889
Atu0594
Position (kb) 577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 576.057 kb on - strand at 576.138 kb on - strand at 576.163 kb on - strand at 576.215 kb on - strand, within Atu0592 at 576.257 kb on + strand, within Atu0592 at 576.415 kb on - strand, within Atu0592 at 576.542 kb on + strand, within Atu0592 at 576.557 kb on + strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.565 kb on - strand, within Atu0592 at 576.767 kb on + strand, within Atu0592 at 576.782 kb on + strand, within Atu0592 at 576.814 kb on + strand, within Atu0592 at 576.981 kb on - strand at 577.035 kb on + strand at 577.089 kb on + strand at 577.094 kb on + strand at 577.096 kb on + strand at 577.096 kb on + strand at 577.213 kb on - strand, within Atu0593 at 577.415 kb on + strand, within Atu0593 at 577.426 kb on - strand, within Atu0593 at 577.428 kb on + strand, within Atu0593 at 577.442 kb on + strand, within Atu0593 at 577.443 kb on + strand, within Atu0593 at 577.443 kb on - strand, within Atu0593 at 577.522 kb on + strand, within Atu0593 at 577.530 kb on - strand, within Atu0593 at 577.586 kb on + strand, within Atu0593 at 577.627 kb on - strand, within Atu0593 at 577.769 kb on - strand, within Atu0593 at 577.817 kb on + strand, within Atu0593 at 578.027 kb on + strand, within Atu0593 at 578.151 kb on - strand at 578.156 kb on - strand at 578.219 kb on + strand at 578.326 kb on - strand at 578.328 kb on + strand at 578.370 kb on + strand at 578.546 kb on - strand, within Atu0594 at 578.637 kb on + strand, within Atu0594 at 578.646 kb on + strand, within Atu0594 at 578.752 kb on + strand, within Atu0594 at 578.787 kb on + strand, within Atu0594 at 578.787 kb on + strand, within Atu0594 at 578.803 kb on - strand, within Atu0594 at 578.943 kb on + strand, within Atu0594 at 579.104 kb on + strand, within Atu0594 at 579.107 kb on + strand, within Atu0594 at 579.180 kb on - strand, within Atu0594
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 576,057 - -0.3 576,138 - +0.5 576,163 - +0.1 576,215 - Atu0592 0.11 -0.6 576,257 + Atu0592 0.16 +0.3 576,415 - Atu0592 0.33 +0.3 576,542 + Atu0592 0.46 -1.0 576,557 + Atu0592 0.48 +0.9 576,565 - Atu0592 0.49 +0.7 576,565 - Atu0592 0.49 +0.2 576,565 - Atu0592 0.49 +1.5 576,767 + Atu0592 0.71 +0.0 576,782 + Atu0592 0.73 -2.8 576,814 + Atu0592 0.76 +0.1 576,981 - -0.1 577,035 + +0.4 577,089 + -0.6 577,094 + +0.4 577,096 + +0.2 577,096 + +0.0 577,213 - Atu0593 0.15 +0.1 577,415 + Atu0593 0.33 -0.0 577,426 - Atu0593 0.34 +0.4 577,428 + Atu0593 0.34 -0.0 577,442 + Atu0593 0.35 +0.5 577,443 + Atu0593 0.35 +0.3 577,443 - Atu0593 0.35 +0.7 577,522 + Atu0593 0.42 +0.5 577,530 - Atu0593 0.43 +0.1 577,586 + Atu0593 0.47 +0.4 577,627 - Atu0593 0.51 +0.4 577,769 - Atu0593 0.63 +0.2 577,817 + Atu0593 0.67 +0.4 578,027 + Atu0593 0.85 +0.5 578,151 - +0.2 578,156 - +1.1 578,219 + -0.1 578,326 - +0.5 578,328 + +1.6 578,370 + +0.2 578,546 - Atu0594 0.19 +0.2 578,637 + Atu0594 0.24 +0.8 578,646 + Atu0594 0.25 +1.1 578,752 + Atu0594 0.31 +0.2 578,787 + Atu0594 0.33 -0.1 578,787 + Atu0594 0.33 +0.4 578,803 - Atu0594 0.34 +0.5 578,943 + Atu0594 0.43 +0.7 579,104 + Atu0594 0.53 +0.6 579,107 + Atu0594 0.53 -0.5 579,180 - Atu0594 0.57 +0.5
Or see this region's nucleotide sequence