Strain Fitness in Agrobacterium fabrum C58 around Atu0503

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
492,332	+		Atu0502	0.41	-0.6
492,413	+		Atu0502	0.48	-0.4
492,414	+		Atu0502	0.48	-1.7
492,496	-		Atu0502	0.55	-0.3
492,508	-		Atu0502	0.56	-0.8
492,637	+		Atu0502	0.67	+0.2
492,637	+		Atu0502	0.67	+0.0
492,637	+		Atu0502	0.67	-2.2
492,645	-		Atu0502	0.67	-0.8
492,645	-		Atu0502	0.67	+0.2
492,683	+		Atu0502	0.70	-0.6
492,683	+		Atu0502	0.70	-0.4
492,683	+		Atu0502	0.70	+0.7
492,942	+				-0.8
492,966	+				+0.2
493,000	-				-1.3
493,064	+				+0.7
493,069	+				-0.1
493,069	+				+0.2
493,072	-				-1.6
493,103	+				-0.1
493,124	-				+0.2
493,170	+				+0.5
493,239	-				-1.3
493,268	+				-0.0
493,276	-				-0.8
493,389	+				-2.1
493,392	-				-0.0
493,517	-		Atu0503	0.13	-0.5
493,549	+		Atu0503	0.15	-0.8
493,557	-		Atu0503	0.15	-0.9
493,615	-		Atu0503	0.18	-1.6
493,758	-		Atu0503	0.24	-0.7
493,769	-		Atu0503	0.25	+0.7
493,785	-		Atu0503	0.25	-0.6
493,800	+		Atu0503	0.26	-0.5
493,850	+		Atu0503	0.28	-0.4
493,882	-		Atu0503	0.30	-0.9
493,892	+		Atu0503	0.30	-0.4
493,975	+		Atu0503	0.34	-0.6
494,075	-		Atu0503	0.38	-0.6
494,080	-		Atu0503	0.39	-1.7
494,090	-		Atu0503	0.39	-0.2
494,168	-		Atu0503	0.43	-0.8
494,202	+		Atu0503	0.44	-0.4
494,240	-		Atu0503	0.46	-1.1
494,258	-		Atu0503	0.47	-0.2
494,302	-		Atu0503	0.49	-0.3
494,319	+		Atu0503	0.49	-1.2
494,327	-		Atu0503	0.50	-0.3
494,327	-		Atu0503	0.50	-0.4
494,328	-		Atu0503	0.50	-0.5
494,340	-		Atu0503	0.50	-0.3
494,348	-		Atu0503	0.51	-0.5
494,350	-		Atu0503	0.51	-1.1
494,386	+		Atu0503	0.52	-0.7
494,392	+		Atu0503	0.53	+0.2
494,393	-		Atu0503	0.53	+0.0
494,474	+		Atu0503	0.56	-0.8
494,541	+		Atu0503	0.59	-0.6
494,549	-		Atu0503	0.60	-1.0
494,700	+		Atu0503	0.67	-0.7
494,808	+		Atu0503	0.71	-1.6
494,808	+		Atu0503	0.71	-0.3
494,977	-		Atu0503	0.79	-0.9
494,991	+		Atu0503	0.80	-0.9
495,090	+		Atu0503	0.84	-0.4
495,108	-		Atu0503	0.85	-0.6
495,181	+		Atu0503	0.88	-0.7
495,270	+				-0.6
495,278	-				-0.2
495,278	-				+3.7
495,278	-				-0.5
495,278	-				-0.4
495,331	+				-0.7
495,363	+				+0.1
495,384	+				+1.0
495,392	-				-0.1
495,452	-				+0.3
495,457	-				+0.3
495,583	+				-0.4
495,583	+				+0.4
495,583	+				-0.1
495,591	-				+0.1
495,591	-				-0.0
495,591	-				-0.2
495,591	-				+1.7
495,681	+		Atu0504	0.19	+0.4
495,687	-		Atu0504	0.21	+0.5
495,843	+		Atu0504	0.57	-0.0
495,906	-		Atu0504	0.71	+0.4
496,000	-				-0.3
496,021	+				-0.1
496,066	-				-0.7
496,068	+				+0.3
496,076	-				-0.4
496,103	+		Atu8010	0.15	+0.4
496,123	+		Atu8010	0.25	-0.2
496,178	-		Atu8010	0.52	+0.5