Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0473 and Atu0474 are separated by 76 nucleotides Atu0474 and Atu0475 overlap by 4 nucleotides Atu0475 and Atu0476 are separated by 268 nucleotides
Atu0473: Atu0473 - hypothetical protein, at 461,846 to 462,760
Atu0473
Atu0474: Atu0474 - putative RNA polymerase sigma-70 factor, at 462,837 to 463,382
Atu0474
Atu0475: Atu0475 - hypothetical protein, at 463,379 to 464,083
Atu0475
Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077
Atu0476
Position (kb) 463
464
465 Strain fitness (log2 ratio) -1
0
1 at 462.390 kb on - strand, within Atu0473 at 462.409 kb on + strand, within Atu0473 at 462.469 kb on + strand, within Atu0473 at 462.487 kb on - strand, within Atu0473 at 462.516 kb on - strand, within Atu0473 at 462.625 kb on - strand, within Atu0473 at 462.630 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.635 kb on - strand, within Atu0473 at 462.650 kb on + strand, within Atu0473 at 462.882 kb on - strand at 463.010 kb on + strand, within Atu0474 at 463.015 kb on + strand, within Atu0474 at 463.026 kb on + strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.034 kb on - strand, within Atu0474 at 463.137 kb on + strand, within Atu0474 at 463.153 kb on + strand, within Atu0474 at 463.419 kb on + strand at 463.424 kb on + strand at 463.424 kb on + strand at 463.444 kb on + strand at 463.452 kb on - strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.475 kb on + strand, within Atu0475 at 463.539 kb on + strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.564 kb on - strand, within Atu0475 at 463.662 kb on + strand, within Atu0475 at 463.715 kb on + strand, within Atu0475 at 463.745 kb on - strand, within Atu0475 at 463.834 kb on - strand, within Atu0475 at 463.837 kb on - strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.861 kb on + strand, within Atu0475 at 463.867 kb on + strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.869 kb on - strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.876 kb on + strand, within Atu0475 at 463.879 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.884 kb on - strand, within Atu0475 at 463.932 kb on + strand, within Atu0475 at 463.987 kb on + strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.009 kb on - strand, within Atu0475 at 464.127 kb on - strand at 464.220 kb on + strand at 464.228 kb on - strand at 464.228 kb on - strand at 464.347 kb on + strand at 464.414 kb on - strand at 464.414 kb on - strand at 464.477 kb on - strand, within Atu0476 at 464.489 kb on + strand, within Atu0476 at 464.495 kb on + strand, within Atu0476 at 464.539 kb on + strand, within Atu0476 at 464.623 kb on - strand, within Atu0476 at 464.658 kb on - strand, within Atu0476 at 464.702 kb on + strand, within Atu0476 at 464.795 kb on - strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.865 kb on - strand, within Atu0476 at 464.928 kb on - strand, within Atu0476 at 464.932 kb on - strand, within Atu0476 at 464.941 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.960 kb on - strand, within Atu0476 at 464.962 kb on + strand, within Atu0476 at 464.974 kb on - strand, within Atu0476
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 462,390 - Atu0473 0.59 +0.2 462,409 + Atu0473 0.62 -0.2 462,469 + Atu0473 0.68 +0.2 462,487 - Atu0473 0.70 +0.0 462,516 - Atu0473 0.73 +1.4 462,625 - Atu0473 0.85 +0.1 462,630 - Atu0473 0.86 -0.5 462,635 - Atu0473 0.86 -0.4 462,635 - Atu0473 0.86 +0.6 462,650 + Atu0473 0.88 -0.1 462,882 - -0.0 463,010 + Atu0474 0.32 -1.1 463,015 + Atu0474 0.33 -0.6 463,026 + Atu0474 0.35 -0.1 463,034 - Atu0474 0.36 -0.3 463,034 - Atu0474 0.36 -0.2 463,034 - Atu0474 0.36 -0.3 463,137 + Atu0474 0.55 -0.1 463,153 + Atu0474 0.58 -0.3 463,419 + -0.1 463,424 + +0.3 463,424 + -0.6 463,444 + +0.2 463,452 - Atu0475 0.10 +0.0 463,475 + Atu0475 0.14 +0.1 463,475 + Atu0475 0.14 +0.4 463,539 + Atu0475 0.23 +0.3 463,564 - Atu0475 0.26 -0.2 463,564 - Atu0475 0.26 +0.5 463,564 - Atu0475 0.26 +0.1 463,662 + Atu0475 0.40 +0.1 463,715 + Atu0475 0.48 +1.0 463,745 - Atu0475 0.52 +0.2 463,834 - Atu0475 0.65 +1.2 463,837 - Atu0475 0.65 +0.7 463,861 + Atu0475 0.68 +1.1 463,861 + Atu0475 0.68 -0.1 463,867 + Atu0475 0.69 +0.1 463,869 - Atu0475 0.70 +0.2 463,869 - Atu0475 0.70 +0.7 463,876 + Atu0475 0.70 +0.3 463,876 + Atu0475 0.70 +0.8 463,876 + Atu0475 0.70 +0.5 463,879 - Atu0475 0.71 -0.8 463,884 - Atu0475 0.72 +0.6 463,884 - Atu0475 0.72 -0.3 463,884 - Atu0475 0.72 +0.8 463,932 + Atu0475 0.78 +0.8 463,987 + Atu0475 0.86 +0.3 464,009 - Atu0475 0.89 +0.8 464,009 - Atu0475 0.89 -0.5 464,127 - +0.2 464,220 + +0.2 464,228 - +0.0 464,228 - -0.2 464,347 + +0.2 464,414 - +0.4 464,414 - +0.2 464,477 - Atu0476 0.17 +0.2 464,489 + Atu0476 0.19 +1.2 464,495 + Atu0476 0.20 -0.2 464,539 + Atu0476 0.26 -0.6 464,623 - Atu0476 0.37 +1.1 464,658 - Atu0476 0.42 -0.7 464,702 + Atu0476 0.48 -0.5 464,795 - Atu0476 0.61 +0.2 464,845 + Atu0476 0.68 -0.6 464,845 + Atu0476 0.68 -0.1 464,845 + Atu0476 0.68 +1.3 464,853 - Atu0476 0.69 +0.1 464,853 - Atu0476 0.69 -0.6 464,853 - Atu0476 0.69 -0.1 464,853 - Atu0476 0.69 -0.2 464,853 - Atu0476 0.69 +0.8 464,857 + Atu0476 0.70 -0.1 464,857 + Atu0476 0.70 -0.2 464,865 - Atu0476 0.71 +0.2 464,928 - Atu0476 0.79 -0.1 464,932 - Atu0476 0.80 -0.2 464,941 + Atu0476 0.81 +0.4 464,957 + Atu0476 0.83 +0.0 464,957 + Atu0476 0.83 +0.6 464,960 - Atu0476 0.84 +0.3 464,962 + Atu0476 0.84 -0.1 464,974 - Atu0476 0.86 -0.8
Or see this region's nucleotide sequence