Strain Fitness in Agrobacterium fabrum C58 around Atu0046

Experiment: methyl jasmonate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0045 and Atu0046 are separated by 194 nucleotidesAtu0046 and Atu0047 are separated by 54 nucleotides Atu0045: Atu0045 - heat shock chaperone, at 45,214 to 46,521 Atu0045 Atu0046: Atu0046 - hypothetical protein, at 46,716 to 47,681 Atu0046 Atu0047: Atu0047 - malate synthase G, at 47,736 to 49,970 Atu0047 Position (kb) 46 47 48Strain fitness (log2 ratio) -1 0 1at 45.812 kb on - strand, within Atu0045at 45.828 kb on + strand, within Atu0045at 45.836 kb on + strand, within Atu0045at 45.849 kb on + strand, within Atu0045at 45.857 kb on - strand, within Atu0045at 45.857 kb on - strand, within Atu0045at 46.013 kb on + strand, within Atu0045at 46.030 kb on + strand, within Atu0045at 46.088 kb on + strand, within Atu0045at 46.114 kb on - strand, within Atu0045at 46.114 kb on - strand, within Atu0045at 46.259 kb on - strand, within Atu0045at 46.273 kb on + strand, within Atu0045at 46.533 kb on - strandat 46.569 kb on + strandat 46.855 kb on + strand, within Atu0046at 46.922 kb on - strand, within Atu0046at 47.009 kb on + strand, within Atu0046at 47.019 kb on - strand, within Atu0046at 47.050 kb on - strand, within Atu0046at 47.100 kb on + strand, within Atu0046at 47.103 kb on - strand, within Atu0046at 47.107 kb on - strand, within Atu0046at 47.117 kb on + strand, within Atu0046at 47.180 kb on - strand, within Atu0046at 47.294 kb on - strand, within Atu0046at 47.309 kb on + strand, within Atu0046at 47.453 kb on - strand, within Atu0046at 47.519 kb on - strand, within Atu0046at 47.662 kb on - strandat 47.799 kb on + strandat 47.883 kb on + strandat 47.883 kb on + strandat 47.883 kb on + strandat 47.891 kb on - strandat 47.891 kb on - strandat 47.947 kb on + strandat 47.994 kb on + strand, within Atu0047at 48.002 kb on - strand, within Atu0047at 48.002 kb on - strand, within Atu0047at 48.043 kb on - strand, within Atu0047at 48.046 kb on + strand, within Atu0047at 48.078 kb on + strand, within Atu0047at 48.182 kb on - strand, within Atu0047at 48.277 kb on - strand, within Atu0047at 48.291 kb on + strand, within Atu0047at 48.346 kb on - strand, within Atu0047at 48.423 kb on + strand, within Atu0047at 48.478 kb on + strand, within Atu0047at 48.641 kb on + strand, within Atu0047at 48.648 kb on + strand, within Atu0047at 48.653 kb on + strand, within Atu0047at 48.667 kb on + strand, within Atu0047at 48.672 kb on + strand, within Atu0047at 48.672 kb on + strand, within Atu0047

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM
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45,812 - Atu0045 0.46 +0.5
45,828 + Atu0045 0.47 +0.8
45,836 + Atu0045 0.48 +0.2
45,849 + Atu0045 0.49 -0.1
45,857 - Atu0045 0.49 -0.7
45,857 - Atu0045 0.49 +0.7
46,013 + Atu0045 0.61 -0.3
46,030 + Atu0045 0.62 +0.1
46,088 + Atu0045 0.67 +0.4
46,114 - Atu0045 0.69 +0.3
46,114 - Atu0045 0.69 +0.1
46,259 - Atu0045 0.80 +0.2
46,273 + Atu0045 0.81 +0.4
46,533 - +0.9
46,569 + -0.2
46,855 + Atu0046 0.14 +0.5
46,922 - Atu0046 0.21 +0.2
47,009 + Atu0046 0.30 +0.7
47,019 - Atu0046 0.31 +0.5
47,050 - Atu0046 0.35 +1.7
47,100 + Atu0046 0.40 +0.3
47,103 - Atu0046 0.40 +0.7
47,107 - Atu0046 0.40 +0.4
47,117 + Atu0046 0.42 +0.3
47,180 - Atu0046 0.48 +1.1
47,294 - Atu0046 0.60 +1.2
47,309 + Atu0046 0.61 +0.3
47,453 - Atu0046 0.76 +0.9
47,519 - Atu0046 0.83 +1.0
47,662 - +1.4
47,799 + +0.5
47,883 + +0.3
47,883 + +0.4
47,883 + +0.6
47,891 - -0.2
47,891 - +0.3
47,947 + -0.9
47,994 + Atu0047 0.12 +0.0
48,002 - Atu0047 0.12 -0.4
48,002 - Atu0047 0.12 -0.3
48,043 - Atu0047 0.14 -0.8
48,046 + Atu0047 0.14 +0.1
48,078 + Atu0047 0.15 +0.1
48,182 - Atu0047 0.20 +0.1
48,277 - Atu0047 0.24 -0.6
48,291 + Atu0047 0.25 +0.0
48,346 - Atu0047 0.27 -0.4
48,423 + Atu0047 0.31 -0.2
48,478 + Atu0047 0.33 -1.2
48,641 + Atu0047 0.40 -0.0
48,648 + Atu0047 0.41 +0.1
48,653 + Atu0047 0.41 +1.7
48,667 + Atu0047 0.42 -0.7
48,672 + Atu0047 0.42 +0.9
48,672 + Atu0047 0.42 -0.2

Or see this region's nucleotide sequence