Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0041 and Atu8115 are separated by 1 nucleotides Atu8115 and Atu0043 are separated by 22 nucleotides Atu0043 and Atu0044 are separated by 242 nucleotides Atu0044 and Atu0045 are separated by 87 nucleotides
Atu0041: Atu0041 - glutamine amidotransferase, at 42,636 to 43,286
Atu0041
Atu8115: Atu8115 - Hypothetical Protein, at 43,288 to 43,782
Atu8115
Atu0043: Atu0043 - imidazoleglycerol-phosphate dehydratase, at 43,805 to 44,401
Atu0043
Atu0044: Atu0044 - heat shock protein hslV, at 44,644 to 45,126
Atu0044
Atu0045: Atu0045 - heat shock chaperone, at 45,214 to 46,521
Atu0045
Position (kb) 43
44
45 Strain fitness (log2 ratio) -1
0
1 at 42.958 kb on + strand, within Atu0041 at 42.990 kb on - strand, within Atu0041 at 43.103 kb on - strand, within Atu0041 at 43.381 kb on - strand, within Atu8115 at 43.393 kb on + strand, within Atu8115 at 43.395 kb on + strand, within Atu8115 at 43.431 kb on + strand, within Atu8115 at 43.432 kb on + strand, within Atu8115 at 43.617 kb on - strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.668 kb on + strand, within Atu8115 at 43.675 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.676 kb on - strand, within Atu8115 at 43.694 kb on + strand, within Atu8115 at 43.796 kb on + strand at 43.817 kb on + strand at 43.942 kb on + strand, within Atu0043 at 44.052 kb on + strand, within Atu0043 at 44.128 kb on + strand, within Atu0043 at 44.128 kb on + strand, within Atu0043 at 44.286 kb on - strand, within Atu0043 at 44.385 kb on + strand at 44.386 kb on - strand at 44.442 kb on - strand at 44.470 kb on - strand at 44.478 kb on - strand at 44.529 kb on + strand at 44.529 kb on + strand at 44.537 kb on - strand at 44.539 kb on + strand at 44.539 kb on + strand at 44.549 kb on + strand at 44.579 kb on - strand at 44.641 kb on - strand at 44.666 kb on + strand at 44.666 kb on + strand at 44.666 kb on + strand at 44.674 kb on - strand at 44.730 kb on - strand, within Atu0044 at 44.762 kb on + strand, within Atu0044 at 44.770 kb on - strand, within Atu0044 at 44.793 kb on + strand, within Atu0044 at 44.827 kb on + strand, within Atu0044 at 44.827 kb on + strand, within Atu0044 at 44.827 kb on + strand, within Atu0044 at 44.835 kb on - strand, within Atu0044 at 44.983 kb on + strand, within Atu0044 at 45.016 kb on + strand, within Atu0044 at 45.088 kb on - strand at 45.089 kb on + strand at 45.097 kb on - strand at 45.129 kb on - strand at 45.160 kb on - strand at 45.296 kb on + strand at 45.296 kb on + strand at 45.296 kb on + strand at 45.304 kb on - strand at 45.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 42,958 + Atu0041 0.49 +1.2 42,990 - Atu0041 0.54 +0.2 43,103 - Atu0041 0.72 +0.0 43,381 - Atu8115 0.19 +0.1 43,393 + Atu8115 0.21 +0.3 43,395 + Atu8115 0.22 -0.2 43,431 + Atu8115 0.29 +0.1 43,432 + Atu8115 0.29 +0.2 43,617 - Atu8115 0.66 +0.1 43,668 + Atu8115 0.77 +0.2 43,668 + Atu8115 0.77 +0.5 43,668 + Atu8115 0.77 +0.4 43,668 + Atu8115 0.77 +0.4 43,668 + Atu8115 0.77 +0.1 43,668 + Atu8115 0.77 +0.4 43,675 - Atu8115 0.78 +0.0 43,676 - Atu8115 0.78 +0.6 43,676 - Atu8115 0.78 +0.2 43,676 - Atu8115 0.78 +0.4 43,676 - Atu8115 0.78 -0.1 43,676 - Atu8115 0.78 +0.0 43,694 + Atu8115 0.82 +1.2 43,796 + +0.7 43,817 + +0.4 43,942 + Atu0043 0.23 +0.4 44,052 + Atu0043 0.41 +0.4 44,128 + Atu0043 0.54 +1.2 44,128 + Atu0043 0.54 +0.4 44,286 - Atu0043 0.81 +0.5 44,385 + +0.9 44,386 - -0.6 44,442 - +1.0 44,470 - +0.1 44,478 - +0.9 44,529 + -0.2 44,529 + +0.9 44,537 - +0.3 44,539 + -0.7 44,539 + +0.0 44,549 + -0.3 44,579 - -0.7 44,641 - +0.2 44,666 + +0.3 44,666 + -0.2 44,666 + +0.1 44,674 - +0.6 44,730 - Atu0044 0.18 -1.1 44,762 + Atu0044 0.24 -0.1 44,770 - Atu0044 0.26 -0.2 44,793 + Atu0044 0.31 +0.8 44,827 + Atu0044 0.38 +0.1 44,827 + Atu0044 0.38 +0.4 44,827 + Atu0044 0.38 +0.2 44,835 - Atu0044 0.40 +0.0 44,983 + Atu0044 0.70 -0.4 45,016 + Atu0044 0.77 -0.2 45,088 - +0.2 45,089 + +0.3 45,097 - -0.3 45,129 - +0.5 45,160 - +0.0 45,296 + -0.8 45,296 + +0.5 45,296 + -0.2 45,304 - +0.1 45,312 - +0.3
Or see this region's nucleotide sequence