Strain Fitness in Agrobacterium fabrum C58 around Atu4830

Experiment: methyl jasmonate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl jasmonate 5 mM
2,009,193	+				+0.3
2,009,202	+				-0.1
2,009,217	-				+0.5
2,009,328	-				+0.2
2,009,415	+				+0.2
2,009,452	+				+0.3
2,009,460	-				-0.3
2,009,460	-				-0.0
2,009,486	+				-0.7
2,009,514	-				-0.2
2,009,563	+				+0.1
2,009,571	-				-0.4
2,009,611	+				+0.1
2,009,618	-				-0.1
2,009,750	-				+2.1
2,009,803	+				+0.1
2,009,838	+				-0.3
2,009,911	+				+0.3
2,010,000	+				-0.0
2,010,001	+				-0.1
2,010,020	+				+2.6
2,010,034	+				+0.1
2,010,118	+				-0.8
2,010,175	-				+0.1
2,010,196	-				-0.3
2,010,256	+		Atu4830	0.10	+0.1
2,010,261	+		Atu4830	0.11	+0.3
2,010,336	+		Atu4830	0.22	-0.5
2,010,336	+		Atu4830	0.22	+0.6
2,010,344	+		Atu4830	0.23	-0.1
2,010,353	+		Atu4830	0.24	-0.0
2,010,379	-		Atu4830	0.28	-0.9
2,010,393	+		Atu4830	0.30	-0.0
2,010,482	-		Atu4830	0.43	-0.1
2,010,622	+		Atu4830	0.63	-0.3
2,010,622	+		Atu4830	0.63	-0.7
2,010,622	+		Atu4830	0.63	-0.3
2,010,663	+		Atu4830	0.69	-0.4
2,010,663	+		Atu4830	0.69	-0.3
2,010,736	-		Atu4830	0.79	+0.2
2,010,751	+		Atu4830	0.81	+0.7
2,010,753	-		Atu4830	0.82	-0.0
2,010,770	-		Atu4830	0.84	+0.0
2,010,883	+				+0.2
2,010,987	+		Atu4831	0.28	-0.8
2,010,995	-		Atu4831	0.31	-0.1
2,011,040	-		Atu4831	0.42	-2.1
2,011,063	+		Atu4831	0.48	+1.7
2,011,078	+		Atu4831	0.52	-0.2
2,011,127	+		Atu4831	0.64	+0.0
2,011,127	+		Atu4831	0.64	+0.6
2,011,127	+		Atu4831	0.64	+0.1
2,011,131	-		Atu4831	0.65	+0.2
2,011,135	-		Atu4831	0.66	-0.0
2,011,135	-		Atu4831	0.66	-0.3
2,011,135	-		Atu4831	0.66	+0.3
2,011,135	-		Atu4831	0.66	+1.0
2,011,196	+		Atu4831	0.82	+0.7
2,011,204	-		Atu4831	0.84	+0.5
2,011,214	-		Atu4831	0.87	-0.1
2,011,230	-				+0.1
2,011,401	-				+1.3
2,011,426	+				-0.1
2,011,448	+				+0.6
2,011,448	+				+0.4
2,011,448	+				+0.3
2,011,467	+				+0.1
2,011,474	+				-0.0
2,011,482	-				-0.0
2,011,482	-				+0.1
2,011,486	+				+0.2
2,011,496	+				-1.6
2,011,556	+				-0.0
2,011,566	+				+0.4
2,011,574	-				+0.7
2,011,603	+				-0.9
2,011,708	-		Atu4832	0.15	+0.0
2,011,836	+		Atu4832	0.49	+0.9
2,011,836	+		Atu4832	0.49	-0.1
2,011,836	+		Atu4832	0.49	+0.1
2,011,844	-		Atu4832	0.51	-0.1
2,011,846	-		Atu4832	0.51	-0.1
2,011,871	+		Atu4832	0.58	-0.6
2,011,871	+		Atu4832	0.58	+0.2