Experiment: methyl jasmonate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0476 and Atu0477 are separated by 22 nucleotides Atu0477 and Atu0478 are separated by 211 nucleotides Atu0478 and Atu0479 are separated by 559 nucleotides
Atu0476: Atu0476 - aquaporin, at 464,352 to 465,077
Atu0476
Atu0477: Atu0477 - hypothetical protein, at 465,100 to 465,423
Atu0477
Atu0478: Atu0478 - glycosyltransferase, at 465,635 to 467,182
Atu0478
Atu0479: Atu0479 - ABC transporter, substrate binding protein (amino acid), at 467,742 to 468,503
Atu0479
Position (kb) 465
466
467
468 Strain fitness (log2 ratio) -2
-1
0
1 at 464.658 kb on - strand, within Atu0476 at 464.702 kb on + strand, within Atu0476 at 464.795 kb on - strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.845 kb on + strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.853 kb on - strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.857 kb on + strand, within Atu0476 at 464.865 kb on - strand, within Atu0476 at 464.928 kb on - strand, within Atu0476 at 464.932 kb on - strand, within Atu0476 at 464.941 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.957 kb on + strand, within Atu0476 at 464.960 kb on - strand, within Atu0476 at 464.962 kb on + strand, within Atu0476 at 464.974 kb on - strand, within Atu0476 at 465.172 kb on + strand, within Atu0477 at 465.384 kb on - strand, within Atu0477 at 465.410 kb on - strand at 465.448 kb on + strand at 465.474 kb on - strand at 465.538 kb on + strand at 465.538 kb on + strand at 465.600 kb on + strand at 465.609 kb on + strand at 465.610 kb on - strand at 465.709 kb on - strand at 465.711 kb on - strand at 465.760 kb on + strand at 465.882 kb on + strand, within Atu0478 at 465.922 kb on - strand, within Atu0478 at 465.952 kb on - strand, within Atu0478 at 465.964 kb on - strand, within Atu0478 at 465.998 kb on + strand, within Atu0478 at 466.042 kb on + strand, within Atu0478 at 466.050 kb on - strand, within Atu0478 at 466.085 kb on - strand, within Atu0478 at 466.141 kb on - strand, within Atu0478 at 466.143 kb on - strand, within Atu0478 at 466.323 kb on + strand, within Atu0478 at 466.348 kb on + strand, within Atu0478 at 466.410 kb on - strand, within Atu0478 at 466.426 kb on - strand, within Atu0478 at 466.532 kb on + strand, within Atu0478 at 466.532 kb on + strand, within Atu0478 at 466.535 kb on - strand, within Atu0478 at 466.540 kb on - strand, within Atu0478 at 466.540 kb on - strand, within Atu0478 at 466.558 kb on + strand, within Atu0478 at 466.558 kb on + strand, within Atu0478 at 466.691 kb on + strand, within Atu0478 at 466.716 kb on + strand, within Atu0478 at 466.747 kb on + strand, within Atu0478 at 466.747 kb on + strand, within Atu0478 at 466.816 kb on + strand, within Atu0478 at 466.826 kb on - strand, within Atu0478 at 466.863 kb on + strand, within Atu0478 at 466.873 kb on + strand, within Atu0478 at 466.889 kb on + strand, within Atu0478 at 466.889 kb on + strand, within Atu0478 at 466.889 kb on + strand, within Atu0478 at 466.897 kb on - strand, within Atu0478 at 466.897 kb on - strand, within Atu0478 at 466.897 kb on - strand, within Atu0478 at 467.095 kb on - strand at 467.166 kb on - strand at 467.171 kb on + strand at 467.233 kb on - strand at 467.375 kb on - strand at 467.420 kb on - strand at 467.439 kb on + strand at 467.449 kb on + strand at 467.482 kb on - strand at 467.779 kb on - strand at 467.881 kb on - strand, within Atu0479 at 467.934 kb on + strand, within Atu0479 at 467.940 kb on + strand, within Atu0479 at 468.016 kb on + strand, within Atu0479 at 468.018 kb on + strand, within Atu0479 at 468.026 kb on + strand, within Atu0479 at 468.063 kb on - strand, within Atu0479
Per-strain Table
Position Strand Gene LocusTag Fraction methyl jasmonate 5 mM remove 464,658 - Atu0476 0.42 +0.2 464,702 + Atu0476 0.48 +0.1 464,795 - Atu0476 0.61 -0.5 464,845 + Atu0476 0.68 -0.0 464,845 + Atu0476 0.68 +0.5 464,845 + Atu0476 0.68 +0.1 464,853 - Atu0476 0.69 +0.7 464,853 - Atu0476 0.69 -1.0 464,853 - Atu0476 0.69 -0.1 464,853 - Atu0476 0.69 +0.3 464,853 - Atu0476 0.69 +1.2 464,857 + Atu0476 0.70 +0.1 464,857 + Atu0476 0.70 -0.3 464,865 - Atu0476 0.71 -0.1 464,928 - Atu0476 0.79 -0.8 464,932 - Atu0476 0.80 +0.2 464,941 + Atu0476 0.81 +0.3 464,957 + Atu0476 0.83 -0.4 464,957 + Atu0476 0.83 +0.2 464,960 - Atu0476 0.84 +0.1 464,962 + Atu0476 0.84 -0.0 464,974 - Atu0476 0.86 -0.4 465,172 + Atu0477 0.22 +1.2 465,384 - Atu0477 0.88 +0.4 465,410 - -1.8 465,448 + +0.7 465,474 - +1.4 465,538 + +0.2 465,538 + -0.1 465,600 + +0.4 465,609 + +0.3 465,610 - -0.4 465,709 - -0.2 465,711 - +0.2 465,760 + +0.7 465,882 + Atu0478 0.16 +0.7 465,922 - Atu0478 0.19 +0.9 465,952 - Atu0478 0.20 +0.6 465,964 - Atu0478 0.21 +0.1 465,998 + Atu0478 0.23 -0.3 466,042 + Atu0478 0.26 +0.9 466,050 - Atu0478 0.27 -0.6 466,085 - Atu0478 0.29 -0.0 466,141 - Atu0478 0.33 +0.0 466,143 - Atu0478 0.33 -0.5 466,323 + Atu0478 0.44 +0.5 466,348 + Atu0478 0.46 +0.2 466,410 - Atu0478 0.50 +0.1 466,426 - Atu0478 0.51 -0.0 466,532 + Atu0478 0.58 -0.3 466,532 + Atu0478 0.58 -0.2 466,535 - Atu0478 0.58 -0.4 466,540 - Atu0478 0.58 -0.1 466,540 - Atu0478 0.58 -0.2 466,558 + Atu0478 0.60 -0.2 466,558 + Atu0478 0.60 +0.4 466,691 + Atu0478 0.68 +1.4 466,716 + Atu0478 0.70 +0.3 466,747 + Atu0478 0.72 -0.2 466,747 + Atu0478 0.72 -0.1 466,816 + Atu0478 0.76 +0.0 466,826 - Atu0478 0.77 -0.6 466,863 + Atu0478 0.79 +0.0 466,873 + Atu0478 0.80 -0.1 466,889 + Atu0478 0.81 -0.7 466,889 + Atu0478 0.81 -0.5 466,889 + Atu0478 0.81 -0.0 466,897 - Atu0478 0.82 +0.1 466,897 - Atu0478 0.82 -0.0 466,897 - Atu0478 0.82 +0.0 467,095 - -0.5 467,166 - +0.6 467,171 + -0.2 467,233 - +0.9 467,375 - +0.2 467,420 - +1.1 467,439 + -0.2 467,449 + +1.0 467,482 - -1.3 467,779 - -1.6 467,881 - Atu0479 0.18 -0.8 467,934 + Atu0479 0.25 -1.9 467,940 + Atu0479 0.26 -1.4 468,016 + Atu0479 0.36 -1.7 468,018 + Atu0479 0.36 -2.0 468,026 + Atu0479 0.37 -0.4 468,063 - Atu0479 0.42 -1.5
Or see this region's nucleotide sequence