Strain Fitness in Agrobacterium fabrum C58 around Atu8159

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,583,731	+		Atu1602	0.27	-1.6
1,583,746	-		Atu1602	0.29	-0.1
1,583,880	-		Atu1602	0.47	-0.9
1,583,907	-		Atu1602	0.51	-0.3
1,583,908	+		Atu1602	0.51	+0.1
1,584,173	+		Atu1602	0.87	+0.3
1,584,260	-				+0.9
1,584,266	+				+0.2
1,584,306	+				+0.1
1,584,331	+				-0.1
1,584,334	-				-0.4
1,584,364	+				+0.2
1,584,489	+				+0.4
1,584,497	-				-0.1
1,584,497	-				+0.3
1,584,497	-				-1.1
1,584,508	-				-0.1
1,584,508	-				-0.3
1,584,510	+				+0.2
1,584,538	+				+0.8
1,584,546	-				+0.1
1,584,660	-				-0.3
1,584,696	+				-0.4
1,584,704	-				+0.2
1,584,720	+				-0.0
1,584,782	+		Atu8159	0.10	-0.9
1,585,134	-		Atu8159	0.77	-0.0
1,585,159	+		Atu8159	0.82	-0.6
1,585,221	-				+0.7
1,585,228	+				-0.4
1,585,308	+				+0.2
1,585,365	+				+0.2
1,585,384	+				+0.0
1,585,392	-				+0.1
1,585,487	+		Atu1604	0.10	-0.2
1,585,490	-		Atu1604	0.11	+0.8
1,585,569	+		Atu1604	0.15	-0.1
1,585,583	-		Atu1604	0.16	-0.2
1,585,603	-		Atu1604	0.17	+0.4
1,585,673	+		Atu1604	0.20	+0.3
1,585,681	-		Atu1604	0.21	-0.0
1,585,681	-		Atu1604	0.21	+0.0
1,585,681	-		Atu1604	0.21	-0.7
1,585,681	-		Atu1604	0.21	+0.3
1,585,767	+		Atu1604	0.25	-0.1
1,585,823	+		Atu1604	0.28	+0.0
1,585,836	-		Atu1604	0.29	-0.2
1,585,943	-		Atu1604	0.35	-0.7
1,586,026	+		Atu1604	0.39	-0.3
1,586,034	-		Atu1604	0.40	+1.1