Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5492 and Atu5493 are separated by 24 nucleotides Atu5493 and Atu5494 are separated by 531 nucleotides Atu5494 and Atu5495 are separated by 702 nucleotides
Atu5492: Atu5492 - hypothetical protein, at 482,554 to 483,156
Atu5492
Atu5493: Atu5493 - hypothetical protein, at 483,181 to 483,498
Atu5493
Atu5494: Atu5494 - hypothetical protein, at 484,030 to 484,524
Atu5494
Atu5495: Atu5495 - hydrolase, at 485,227 to 486,087
Atu5495
Position (kb) 484
485 Strain fitness (log2 ratio) -2
-1
0
1 at 483.084 kb on - strand, within Atu5492 at 483.105 kb on + strand at 483.202 kb on - strand at 483.249 kb on + strand, within Atu5493 at 483.257 kb on - strand, within Atu5493 at 483.271 kb on - strand, within Atu5493 at 483.284 kb on + strand, within Atu5493 at 483.294 kb on + strand, within Atu5493 at 483.294 kb on + strand, within Atu5493 at 483.406 kb on - strand, within Atu5493 at 483.683 kb on - strand at 483.729 kb on + strand at 483.745 kb on + strand at 483.759 kb on + strand at 483.761 kb on - strand at 483.856 kb on + strand at 483.858 kb on + strand at 483.858 kb on + strand at 483.888 kb on + strand at 483.895 kb on + strand at 483.920 kb on + strand at 483.981 kb on + strand at 483.981 kb on + strand at 483.989 kb on - strand at 484.107 kb on + strand, within Atu5494 at 484.107 kb on + strand, within Atu5494 at 484.107 kb on + strand, within Atu5494 at 484.107 kb on + strand, within Atu5494 at 484.115 kb on - strand, within Atu5494 at 484.115 kb on - strand, within Atu5494 at 484.122 kb on - strand, within Atu5494 at 484.206 kb on + strand, within Atu5494 at 484.302 kb on - strand, within Atu5494 at 484.332 kb on + strand, within Atu5494 at 484.402 kb on - strand, within Atu5494 at 484.549 kb on + strand at 484.613 kb on - strand at 484.620 kb on - strand at 484.623 kb on - strand at 484.663 kb on + strand at 484.676 kb on - strand at 484.684 kb on + strand at 484.712 kb on - strand at 484.752 kb on + strand at 484.776 kb on - strand at 484.807 kb on + strand at 484.826 kb on - strand at 484.833 kb on - strand at 484.849 kb on + strand at 484.857 kb on - strand at 484.857 kb on - strand at 484.895 kb on + strand at 484.895 kb on + strand at 484.903 kb on - strand at 484.903 kb on - strand at 484.917 kb on - strand at 484.922 kb on - strand at 484.972 kb on + strand at 484.972 kb on + strand at 484.980 kb on - strand at 485.046 kb on + strand at 485.046 kb on + strand at 485.046 kb on + strand at 485.046 kb on + strand at 485.050 kb on - strand at 485.086 kb on + strand at 485.113 kb on - strand at 485.113 kb on - strand at 485.138 kb on + strand at 485.144 kb on + strand at 485.151 kb on - strand at 485.152 kb on - strand at 485.212 kb on + strand at 485.222 kb on - strand at 485.222 kb on - strand at 485.222 kb on - strand at 485.222 kb on - strand at 485.273 kb on + strand at 485.328 kb on + strand, within Atu5495 at 485.328 kb on + strand, within Atu5495 at 485.328 kb on + strand, within Atu5495 at 485.336 kb on - strand, within Atu5495 at 485.336 kb on - strand, within Atu5495 at 485.336 kb on - strand, within Atu5495 at 485.345 kb on - strand, within Atu5495 at 485.349 kb on + strand, within Atu5495 at 485.357 kb on - strand, within Atu5495 at 485.357 kb on - strand, within Atu5495 at 485.362 kb on - strand, within Atu5495 at 485.372 kb on - strand, within Atu5495 at 485.388 kb on + strand, within Atu5495 at 485.408 kb on + strand, within Atu5495 at 485.443 kb on - strand, within Atu5495 at 485.443 kb on - strand, within Atu5495 at 485.455 kb on + strand, within Atu5495 at 485.463 kb on - strand, within Atu5495 at 485.473 kb on + strand, within Atu5495 at 485.481 kb on - strand, within Atu5495 at 485.481 kb on - strand, within Atu5495
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 483,084 - Atu5492 0.88 +0.0 483,105 + +1.6 483,202 - -0.2 483,249 + Atu5493 0.21 +0.5 483,257 - Atu5493 0.24 +0.6 483,271 - Atu5493 0.28 -0.3 483,284 + Atu5493 0.32 -0.0 483,294 + Atu5493 0.36 -0.4 483,294 + Atu5493 0.36 +0.0 483,406 - Atu5493 0.71 +0.4 483,683 - +0.4 483,729 + +1.0 483,745 + -0.2 483,759 + +0.0 483,761 - -0.1 483,856 + -0.1 483,858 + -0.2 483,858 + +0.0 483,888 + -0.0 483,895 + -0.1 483,920 + -0.6 483,981 + -1.7 483,981 + -0.1 483,989 - +0.5 484,107 + Atu5494 0.16 +0.2 484,107 + Atu5494 0.16 +0.3 484,107 + Atu5494 0.16 -0.8 484,107 + Atu5494 0.16 +0.3 484,115 - Atu5494 0.17 -0.6 484,115 - Atu5494 0.17 -0.4 484,122 - Atu5494 0.19 -1.2 484,206 + Atu5494 0.36 +0.3 484,302 - Atu5494 0.55 -0.5 484,332 + Atu5494 0.61 -0.4 484,402 - Atu5494 0.75 -0.9 484,549 + -0.1 484,613 - +0.5 484,620 - +0.1 484,623 - +0.3 484,663 + -1.0 484,676 - +0.8 484,684 + +0.5 484,712 - -0.6 484,752 + -0.1 484,776 - -0.1 484,807 + +0.0 484,826 - -0.1 484,833 - +0.4 484,849 + -0.0 484,857 - -0.3 484,857 - -1.4 484,895 + -0.8 484,895 + +1.1 484,903 - +0.1 484,903 - -0.5 484,917 - -0.8 484,922 - -0.1 484,972 + -0.3 484,972 + +0.1 484,980 - -0.7 485,046 + -0.4 485,046 + -0.3 485,046 + -0.8 485,046 + -0.3 485,050 - +0.2 485,086 + +0.2 485,113 - +0.1 485,113 - -0.3 485,138 + -0.0 485,144 + +0.8 485,151 - +1.6 485,152 - +0.0 485,212 + +1.1 485,222 - -0.4 485,222 - +0.4 485,222 - -0.1 485,222 - -0.4 485,273 + -0.1 485,328 + Atu5495 0.12 +0.1 485,328 + Atu5495 0.12 -0.4 485,328 + Atu5495 0.12 +0.0 485,336 - Atu5495 0.13 -0.1 485,336 - Atu5495 0.13 +0.7 485,336 - Atu5495 0.13 +0.5 485,345 - Atu5495 0.14 -1.2 485,349 + Atu5495 0.14 -2.2 485,357 - Atu5495 0.15 -0.3 485,357 - Atu5495 0.15 -0.3 485,362 - Atu5495 0.16 -0.1 485,372 - Atu5495 0.17 +0.5 485,388 + Atu5495 0.19 +0.9 485,408 + Atu5495 0.21 -0.1 485,443 - Atu5495 0.25 -0.2 485,443 - Atu5495 0.25 +0.0 485,455 + Atu5495 0.26 -0.7 485,463 - Atu5495 0.27 +0.6 485,473 + Atu5495 0.29 -0.0 485,481 - Atu5495 0.30 +1.1 485,481 - Atu5495 0.30 -0.1
Or see this region's nucleotide sequence