Strain Fitness in Agrobacterium fabrum C58 around Atu5007

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
8,018	+		Atu5006	0.12	-0.2
8,026	-		Atu5006	0.13	-0.1
8,026	-		Atu5006	0.13	-0.6
8,030	+		Atu5006	0.13	-0.6
8,031	-		Atu5006	0.13	-0.0
8,038	-		Atu5006	0.14	-0.7
8,050	-		Atu5006	0.15	-0.3
8,137	-		Atu5006	0.26	+0.4
8,185	-		Atu5006	0.32	-0.1
8,272	+		Atu5006	0.42	-0.4
8,307	-		Atu5006	0.46	+0.0
8,347	+		Atu5006	0.51	+1.7
8,376	+		Atu5006	0.55	-0.3
8,579	+		Atu5006	0.79	-0.1
8,580	-		Atu5006	0.79	-0.6
8,599	-		Atu5006	0.81	-0.5
8,630	+		Atu5006	0.85	-0.0
8,682	+				+0.1
8,771	+				-0.0
8,899	-				+0.4
8,920	-				-0.0
8,994	+				+0.2
9,043	-				+0.3
9,051	+				-0.0
9,080	+				+0.1
9,209	-		Atu5007	0.22	+0.5
9,313	+		Atu5007	0.31	+0.1
9,401	+		Atu5007	0.40	-0.2
9,424	-		Atu5007	0.42	+0.6
9,468	-		Atu5007	0.46	-0.9
9,638	+		Atu5007	0.62	+0.3
9,646	-		Atu5007	0.63	+0.3
9,651	+		Atu5007	0.63	+0.6
9,755	+		Atu5007	0.73	+0.8
9,782	+		Atu5007	0.75	-0.1
9,791	+		Atu5007	0.76	+0.3
9,791	+		Atu5007	0.76	+0.5
9,791	+		Atu5007	0.76	-0.1
9,791	+		Atu5007	0.76	+0.3
9,799	-		Atu5007	0.77	+0.0
9,799	-		Atu5007	0.77	+0.1
9,902	+		Atu5007	0.87	+0.6
9,963	+				+0.1
10,033	-				+0.1
10,059	-				-0.1
10,074	+				+0.3
10,074	+				-0.7
10,079	+				-1.0
10,082	-				+0.4
10,082	-				-0.1
10,243	+				+0.7
10,243	+				-0.4
10,251	-				-0.2
10,251	-				-0.3
10,313	+				-0.1
10,593	+				+1.7
10,628	-				-0.3
10,749	-		Atu5008	0.10	+0.1
10,749	-		Atu5008	0.10	+0.4
10,766	-		Atu5008	0.13	+0.3
10,771	-		Atu5008	0.13	-0.1
10,863	-		Atu5008	0.25	-0.1
10,957	-		Atu5008	0.37	-0.1
11,011	+		Atu5008	0.44	+0.0