Strain Fitness in Agrobacterium fabrum C58 around Atu4618

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,764,170	-				-0.6
1,764,206	+		Atu4617	0.13	+0.3
1,764,220	+		Atu4617	0.14	+0.2
1,764,351	+		Atu4617	0.27	-0.2
1,764,418	+		Atu4617	0.33	+0.1
1,764,526	-		Atu4617	0.43	+0.1
1,764,526	-		Atu4617	0.43	+0.5
1,764,600	-		Atu4617	0.50	+0.6
1,764,707	-		Atu4617	0.61	-0.5
1,764,774	-		Atu4617	0.67	+0.5
1,764,774	-		Atu4617	0.67	+0.2
1,764,803	-		Atu4617	0.70	+0.4
1,764,894	+		Atu4617	0.78	+0.1
1,764,902	-		Atu4617	0.79	+0.4
1,764,921	+		Atu4617	0.81	+0.2
1,764,999	-		Atu4617	0.88	+0.9
1,765,009	-		Atu4617	0.89	+0.9
1,765,042	+				-0.2
1,765,124	+				-0.9
1,765,236	-		Atu4618	0.19	+0.8
1,765,247	-		Atu4618	0.21	-0.0
1,765,267	+		Atu4618	0.25	-0.2
1,765,267	+		Atu4618	0.25	+0.4
1,765,275	-		Atu4618	0.26	+0.7
1,765,277	+		Atu4618	0.26	-0.0
1,765,285	-		Atu4618	0.28	-0.3
1,765,287	-		Atu4618	0.28	-0.3
1,765,290	-		Atu4618	0.29	+0.7
1,765,342	+		Atu4618	0.38	+1.4
1,765,366	-		Atu4618	0.42	+0.1
1,765,395	-		Atu4618	0.47	+0.0
1,765,407	+		Atu4618	0.49	-0.0
1,765,407	+		Atu4618	0.49	+0.2
1,765,407	+		Atu4618	0.49	+0.7
1,765,415	-		Atu4618	0.51	+0.7
1,765,415	-		Atu4618	0.51	+0.5
1,765,415	-		Atu4618	0.51	+0.3
1,765,415	-		Atu4618	0.51	+0.2
1,765,417	+		Atu4618	0.51	-0.2
1,765,440	-		Atu4618	0.55	+0.4
1,765,478	+		Atu4618	0.62	+0.7
1,765,478	+		Atu4618	0.62	-0.0
1,765,486	-		Atu4618	0.63	+0.1
1,765,486	-		Atu4618	0.63	+0.6
1,765,526	+		Atu4618	0.70	+2.1
1,765,526	+		Atu4618	0.70	+0.0
1,765,534	-		Atu4618	0.72	+0.7
1,765,625	+		Atu4618	0.88	+0.3
1,765,633	-		Atu4618	0.89	+0.8
1,765,650	+				-0.1
1,765,721	+				-0.5
1,765,764	-				-0.0
1,765,779	+				-0.7
1,765,787	-				-0.4
1,765,792	+				-0.0
1,765,887	+				+0.1
1,765,895	-				-0.1
1,765,900	+				+0.1
1,765,907	-				+0.2
1,765,933	-				-0.4
1,766,014	+				-0.6
1,766,071	+		Atu4619	0.11	+0.2
1,766,071	+		Atu4619	0.11	-0.2
1,766,071	+		Atu4619	0.11	+0.1
1,766,142	+		Atu4619	0.15	-0.2
1,766,142	-		Atu4619	0.15	-0.3
1,766,147	-		Atu4619	0.15	+0.1
1,766,184	+		Atu4619	0.17	-0.1
1,766,217	+		Atu4619	0.18	-0.2
1,766,277	+		Atu4619	0.21	-0.8
1,766,473	+		Atu4619	0.31	-0.1
1,766,481	-		Atu4619	0.31	+0.4
1,766,566	-		Atu4619	0.35	-0.3
1,766,613	+		Atu4619	0.37	-0.3
1,766,669	-		Atu4619	0.40	-0.5