Strain Fitness in Agrobacterium fabrum C58 around Atu4615

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,761,385	+				+0.6
1,761,390	+				-0.2
1,761,398	-				-0.3
1,761,470	+		Atu4614	0.15	+0.2
1,761,540	-		Atu4614	0.23	+0.7
1,761,562	+		Atu4614	0.25	-0.0
1,761,563	-		Atu4614	0.25	+0.0
1,761,570	-		Atu4614	0.26	+0.6
1,761,765	-		Atu4614	0.48	-0.1
1,761,770	-		Atu4614	0.49	+0.9
1,761,770	-		Atu4614	0.49	+0.5
1,761,821	-		Atu4614	0.55	-0.2
1,761,903	+		Atu4614	0.64	+0.6
1,761,916	+		Atu4614	0.65	+1.3
1,762,006	+		Atu4614	0.76	+0.2
1,762,014	-		Atu4614	0.77	+0.1
1,762,079	+		Atu4614	0.84	+0.5
1,762,086	+		Atu4614	0.85	+0.7
1,762,112	+		Atu4614	0.88	+1.1
1,762,112	+		Atu4614	0.88	-0.7
1,762,168	-				+0.4
1,762,254	+				+0.4
1,762,312	-				+0.8
1,762,312	-				+0.0
1,762,312	-				+0.6
1,762,312	-				+0.8
1,762,398	+		Atu4615	0.10	-0.8
1,762,425	-		Atu4615	0.14	+0.5
1,762,441	-		Atu4615	0.15	+0.4
1,762,479	-		Atu4615	0.20	-0.2
1,762,609	+		Atu4615	0.35	+0.4
1,762,626	+		Atu4615	0.37	+0.8
1,762,633	-		Atu4615	0.38	+0.8
1,762,749	-		Atu4615	0.51	-0.6
1,762,779	-		Atu4615	0.54	+1.9
1,762,836	-		Atu4615	0.61	+0.9
1,762,839	+		Atu4615	0.61	-0.0
1,762,858	+		Atu4615	0.64	-0.7
1,762,858	+		Atu4615	0.64	+0.3
1,762,858	+		Atu4615	0.64	-0.3
1,762,858	+		Atu4615	0.64	+0.1
1,762,866	-		Atu4615	0.64	-0.7
1,762,866	-		Atu4615	0.64	+0.5
1,762,910	-		Atu4615	0.70	+0.3
1,762,941	-		Atu4615	0.73	-0.1
1,763,003	+		Atu4615	0.80	+1.1
1,763,011	-		Atu4615	0.81	+0.1
1,763,055	-		Atu4615	0.86	+1.4
1,763,092	-				-0.0
1,763,129	-				+1.4
1,763,154	+				-1.1
1,763,417	+		Atu4616	0.28	+0.4
1,763,817	+		Atu4616	0.72	+0.8
1,763,860	+		Atu4616	0.77	-0.1
1,764,018	-				+1.4
1,764,065	+				-0.1
1,764,093	-				+0.3
1,764,112	-				+0.3
1,764,119	-				+0.7
1,764,170	-				-0.6