Strain Fitness in Agrobacterium fabrum C58 around Atu4407

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,541,071	+				+0.0
1,541,074	+				+0.2
1,541,076	+				+0.1
1,541,076	+				+0.0
1,541,076	+				-0.4
1,541,084	-				+0.2
1,541,084	-				+0.5
1,541,109	+				+0.3
1,541,119	-				+0.2
1,541,158	-				-0.4
1,541,267	+				+0.6
1,541,288	-				+0.1
1,541,356	+				+0.1
1,541,455	-		Atu4405	0.38	+0.1
1,541,456	+		Atu4405	0.39	-0.0
1,541,464	-		Atu4405	0.43	+0.3
1,541,801	+		Atu4406	0.45	-0.0
1,541,873	+		Atu4406	0.59	-0.7
1,542,173	-		Atu4407	0.36	-0.0
1,542,262	-		Atu4407	0.67	+0.7
1,542,352	+				+0.8
1,542,360	-				+0.0
1,542,516	+				+1.5
1,542,583	-		Atu4408	0.10	-0.3
1,542,600	-		Atu4408	0.11	-0.3
1,542,669	+		Atu4408	0.13	+0.3
1,542,677	-		Atu4408	0.14	+0.5
1,542,707	-		Atu4408	0.15	+0.2
1,542,711	+		Atu4408	0.15	-0.4
1,542,882	-		Atu4408	0.22	-0.3
1,542,920	-		Atu4408	0.23	+0.5
1,543,002	+		Atu4408	0.27	-1.3
1,543,014	-		Atu4408	0.27	-0.2
1,543,123	-		Atu4408	0.32	-0.6
1,543,125	-		Atu4408	0.32	+0.1
1,543,242	+		Atu4408	0.36	-0.7