Strain Fitness in Agrobacterium fabrum C58 around Atu4147

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,263,263	+		Atu4146	0.48	+0.1
1,263,412	-		Atu4146	0.56	+0.4
1,263,412	-		Atu4146	0.56	-0.4
1,263,414	+		Atu4146	0.56	-0.1
1,263,422	-		Atu4146	0.57	-0.5
1,263,426	+		Atu4146	0.57	-0.4
1,263,426	+		Atu4146	0.57	-0.2
1,263,426	+		Atu4146	0.57	+0.2
1,263,426	+		Atu4146	0.57	+0.8
1,263,426	+		Atu4146	0.57	+1.1
1,263,426	+		Atu4146	0.57	+0.5
1,263,426	+		Atu4146	0.57	-0.7
1,263,426	+		Atu4146	0.57	-0.1
1,263,426	+		Atu4146	0.57	-0.1
1,263,426	+		Atu4146	0.57	-0.9
1,263,426	+		Atu4146	0.57	-0.9
1,263,426	+		Atu4146	0.57	+0.0
1,263,426	+		Atu4146	0.57	+0.0
1,263,433	+		Atu4146	0.57	-0.0
1,263,433	+		Atu4146	0.57	-0.1
1,263,433	+		Atu4146	0.57	+1.0
1,263,433	+		Atu4146	0.57	-1.1
1,263,434	-		Atu4146	0.57	+0.1
1,263,434	-		Atu4146	0.57	+0.3
1,263,434	-		Atu4146	0.57	-0.4
1,263,434	-		Atu4146	0.57	+1.0
1,263,434	-		Atu4146	0.57	-0.0
1,263,434	-		Atu4146	0.57	+0.1
1,263,434	-		Atu4146	0.57	+0.2
1,263,434	-		Atu4146	0.57	+0.1
1,263,434	-		Atu4146	0.57	-0.6
1,263,434	-		Atu4146	0.57	+0.3
1,263,434	-		Atu4146	0.57	-0.0
1,263,434	-		Atu4146	0.57	-0.2
1,263,441	-		Atu4146	0.58	-1.2
1,263,441	-		Atu4146	0.58	-0.1
1,263,441	-		Atu4146	0.58	+0.7
1,263,529	+		Atu4146	0.62	+0.1
1,263,618	+		Atu4146	0.67	+1.5
1,263,672	-		Atu4146	0.70	+0.3
1,263,696	-		Atu4146	0.71	+0.5
1,263,702	+		Atu4146	0.72	-0.4
1,263,733	+		Atu4146	0.73	-0.2
1,263,741	-		Atu4146	0.74	+0.5
1,263,743	+		Atu4146	0.74	+0.1
1,263,803	+		Atu4146	0.77	+0.0
1,263,873	+		Atu4146	0.81	-0.9
1,263,997	+		Atu4146	0.87	+0.2
1,264,050	-				-0.0
1,264,211	-				-1.2
1,264,227	+				+0.9
1,264,231	-				+0.4
1,264,311	-				+0.1
1,264,311	-				+0.6
1,264,349	+				+0.4
1,264,364	+		Atu4147	0.11	-0.1
1,264,372	-		Atu4147	0.12	-0.5
1,264,394	-		Atu4147	0.14	-0.4
1,264,404	-		Atu4147	0.15	-0.1
1,264,516	-		Atu4147	0.26	-0.5
1,264,551	+		Atu4147	0.29	+0.1
1,264,559	-		Atu4147	0.30	+0.2
1,264,655	-		Atu4147	0.39	-1.4
1,264,751	-		Atu4147	0.48	-0.4
1,264,767	+		Atu4147	0.50	-0.4
1,264,773	-		Atu4147	0.50	-0.9
1,264,775	+		Atu4147	0.51	-0.2
1,264,850	+		Atu4147	0.58	-1.0
1,264,939	-		Atu4147	0.66	+0.6
1,264,948	+		Atu4147	0.67	+0.1
1,264,977	+		Atu4147	0.70	-0.5
1,265,116	-		Atu4147	0.83	-0.6
1,265,221	+				-0.6
1,265,233	-				-0.0
1,265,294	-				-0.2
1,265,378	-				+0.3
1,265,378	-				-0.5
1,265,414	-		Atu4148	0.12	-1.1
1,265,542	+		Atu4148	0.24	-0.4
1,265,546	+		Atu4148	0.25	-0.1
1,265,611	-		Atu4148	0.31	-0.5
1,265,615	+		Atu4148	0.32	+0.2
1,265,734	-		Atu4148	0.43	-0.6
1,265,818	+		Atu4148	0.51	-0.3
1,265,821	-		Atu4148	0.52	+2.2
1,265,821	-		Atu4148	0.52	-1.5
1,265,821	-		Atu4148	0.52	-0.2
1,265,958	+		Atu4148	0.65	-0.8
1,265,958	+		Atu4148	0.65	+0.8
1,266,114	-		Atu4148	0.80	+0.6
1,266,163	+		Atu4148	0.85	-2.0