Strain Fitness in Agrobacterium fabrum C58 around Atu4144

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,260,308	+		Atu4141	0.82	+0.2
1,260,317	-		Atu4141	0.84	-0.3
1,260,325	-		Atu4141	0.86	-0.2
1,260,342	+		Atu4141	0.90	+0.6
1,260,350	-				-0.8
1,260,443	+				-0.9
1,260,533	+		Atu4142	0.16	-0.4
1,260,600	+		Atu4142	0.27	-0.4
1,260,632	+		Atu4142	0.33	-0.0
1,260,643	+		Atu4142	0.35	+0.2
1,260,738	+		Atu4142	0.52	-0.3
1,260,823	+		Atu4142	0.67	+0.6
1,260,915	+		Atu4142	0.84	-0.4
1,260,915	+		Atu4142	0.84	+0.3
1,260,915	+		Atu4142	0.84	+0.0
1,260,925	+		Atu4142	0.85	+0.5
1,260,925	+		Atu4142	0.85	-0.8
1,260,938	+		Atu4142	0.88	+0.0
1,260,943	+		Atu4142	0.89	+0.5
1,260,946	-		Atu4142	0.89	+0.6
1,260,998	-				-0.3
1,261,079	-		Atu4143	0.24	-0.3
1,261,110	+		Atu4143	0.38	-0.1
1,261,160	+		Atu4143	0.61	-0.3
1,261,264	-				+0.0
1,261,293	+				+0.2
1,261,460	+		Atu4144	0.89	-0.6
1,261,468	-				-0.5
1,261,516	-				+0.1
1,261,548	-				+1.6
1,261,665	-		Atu4145	0.16	+0.2
1,261,711	-		Atu4145	0.21	+0.1
1,261,753	+		Atu4145	0.27	+0.2
1,261,761	-		Atu4145	0.28	+0.2
1,261,827	+		Atu4145	0.36	+0.5
1,261,835	+		Atu4145	0.36	-0.4
1,261,835	+		Atu4145	0.36	-1.5
1,261,850	+		Atu4145	0.38	+1.0
1,261,979	+		Atu4145	0.54	-0.1
1,261,987	-		Atu4145	0.55	+0.0
1,262,091	-		Atu4145	0.68	-0.0
1,262,091	-		Atu4145	0.68	-0.8
1,262,146	-		Atu4145	0.74	-1.0
1,262,146	-		Atu4145	0.74	-0.4
1,262,179	+		Atu4145	0.78	+1.3
1,262,264	+		Atu4145	0.88	-0.4
1,262,368	+				-0.1
1,262,413	-				+0.4
1,262,425	+				+0.1
1,262,449	+				+0.0
1,262,449	+				+0.4
1,262,452	-				-0.0