Strain Fitness in Agrobacterium fabrum C58 around Atu3853

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
942,743	-				-0.5
942,744	-				+0.1
942,757	-				+0.5
942,758	-				-0.5
942,773	-				+0.2
942,820	+				-0.2
942,825	+				+1.1
942,867	-				-0.0
942,943	-				-0.2
942,946	+				+0.0
942,946	+				-0.7
942,954	-				+0.4
943,019	+				+0.1
943,019	+				+0.2
943,027	-				-0.5
943,027	-				+0.1
943,027	-				-0.6
943,027	-				+0.4
943,027	-				+0.9
943,125	+		Atu3851	0.39	+0.1
943,155	+		Atu3851	0.49	-0.1
943,163	-		Atu3851	0.51	+0.0
943,206	+		Atu3851	0.65	-0.0
943,206	+		Atu3851	0.65	-0.3
943,214	+		Atu3851	0.68	-0.3
943,222	-		Atu3851	0.71	-0.2
943,222	-		Atu3851	0.71	+0.5
943,240	+		Atu3851	0.77	+0.1
943,312	+				+0.1
943,356	+		Atu3852	0.13	-0.0
943,364	-		Atu3852	0.16	-0.7
943,400	-		Atu3852	0.30	-0.3
943,400	-		Atu3852	0.30	+0.1
943,400	-		Atu3852	0.30	-0.9
943,400	-		Atu3852	0.30	-1.5
943,421	-		Atu3852	0.37	-0.1
943,421	-		Atu3852	0.37	+0.0
943,556	+		Atu3852	0.88	-1.1
943,564	-				-0.3
943,660	+				+0.5
943,678	-				-0.1
943,697	-				+0.5
943,697	-				+0.1
943,754	+				+0.7
943,803	-		Atu3853	0.35	+0.8
943,830	-		Atu3853	0.50	+0.7
943,835	-		Atu3853	0.53	+0.1
943,835	-		Atu3853	0.53	+0.1
943,844	+		Atu3853	0.58	+0.3
943,871	+		Atu3853	0.73	+0.4
943,871	+		Atu3853	0.73	+0.3
943,871	+		Atu3853	0.73	+0.5
943,879	-		Atu3853	0.78	-0.8
943,879	-		Atu3853	0.78	+0.5
943,883	+		Atu3853	0.80	+0.7
943,883	+		Atu3853	0.80	-0.0
943,926	+				+0.2
943,934	-				-0.1
943,955	-				-0.7
944,023	+				+0.7
944,090	-				+0.5
944,117	+				+0.0
944,120	-				+0.1
944,122	+				-0.2
944,125	-				-0.1
944,125	-				+1.5
944,125	-				-0.3
944,125	-				-0.4
944,128	+				+0.1
944,135	-				-0.3
944,152	+				+0.0
944,180	-				-0.2
944,182	+				+0.2
944,182	+				-1.5
944,190	-				-0.2
944,190	-				-0.2
944,190	-				-0.1
944,190	-				+1.2
944,242	+				-0.2
944,255	+				+0.3
944,265	-				-0.6
944,324	+		Atu3854	0.11	-0.5
944,330	-		Atu3854	0.11	-0.3
944,332	-		Atu3854	0.11	-0.6
944,422	+		Atu3854	0.15	-0.5
944,422	+		Atu3854	0.15	+0.6
944,542	+		Atu3854	0.21	-0.1
944,634	-		Atu3854	0.26	-2.2
944,634	-		Atu3854	0.26	-0.1
944,670	-		Atu3854	0.27	+0.7
944,682	-		Atu3854	0.28	-0.3
944,704	+		Atu3854	0.29	-0.1
944,724	-		Atu3854	0.30	+0.7
944,738	+		Atu3854	0.31	-0.4
944,738	+		Atu3854	0.31	+0.0
944,753	-		Atu3854	0.31	-0.1
944,760	+		Atu3854	0.32	-0.1
944,823	-		Atu3854	0.35	-0.3