Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3779 and Atu3780 are separated by 63 nucleotides Atu3780 and Atu3781 are separated by 251 nucleotides Atu3781 and Atu3782 overlap by 4 nucleotides
Atu3779: Atu3779 - lytic murein transglycosylase, at 861,908 to 863,128
Atu3779
Atu3780: Atu3780 - hypothetical protein, at 863,192 to 864,427
Atu3780
Atu3781: Atu3781 - two component response regulator, at 864,679 to 865,353
Atu3781
Atu3782: Atu3782 - two component sensor kinase, at 865,350 to 866,705
Atu3782
Position (kb) 863
864
865 Strain fitness (log2 ratio) -1
0
1
2 at 862.237 kb on + strand, within Atu3779 at 862.237 kb on + strand, within Atu3779 at 862.327 kb on + strand, within Atu3779 at 862.352 kb on - strand, within Atu3779 at 862.369 kb on + strand, within Atu3779 at 862.369 kb on + strand, within Atu3779 at 862.460 kb on - strand, within Atu3779 at 862.509 kb on - strand, within Atu3779 at 862.546 kb on - strand, within Atu3779 at 862.620 kb on + strand, within Atu3779 at 862.740 kb on - strand, within Atu3779 at 862.746 kb on - strand, within Atu3779 at 862.860 kb on + strand, within Atu3779 at 862.868 kb on - strand, within Atu3779 at 862.868 kb on - strand, within Atu3779 at 862.933 kb on + strand, within Atu3779 at 862.938 kb on + strand, within Atu3779 at 863.001 kb on - strand, within Atu3779 at 863.057 kb on + strand at 863.107 kb on + strand at 863.119 kb on + strand at 863.122 kb on - strand at 863.163 kb on + strand at 863.180 kb on - strand at 863.249 kb on + strand at 863.306 kb on - strand at 863.440 kb on + strand, within Atu3780 at 863.609 kb on - strand, within Atu3780 at 863.609 kb on - strand, within Atu3780 at 863.628 kb on - strand, within Atu3780 at 863.816 kb on + strand, within Atu3780 at 863.856 kb on + strand, within Atu3780 at 864.159 kb on + strand, within Atu3780 at 864.159 kb on + strand, within Atu3780 at 864.167 kb on - strand, within Atu3780 at 864.217 kb on - strand, within Atu3780 at 864.217 kb on - strand, within Atu3780 at 864.532 kb on + strand at 864.545 kb on - strand at 864.599 kb on - strand at 864.724 kb on - strand at 864.724 kb on - strand at 864.741 kb on - strand at 864.762 kb on - strand, within Atu3781 at 864.796 kb on + strand, within Atu3781 at 864.796 kb on + strand, within Atu3781 at 864.804 kb on - strand, within Atu3781 at 864.804 kb on - strand, within Atu3781 at 864.815 kb on + strand, within Atu3781 at 864.934 kb on + strand, within Atu3781 at 864.982 kb on + strand, within Atu3781 at 865.055 kb on + strand, within Atu3781 at 865.091 kb on + strand, within Atu3781 at 865.173 kb on + strand, within Atu3781 at 865.175 kb on + strand, within Atu3781 at 865.181 kb on - strand, within Atu3781 at 865.181 kb on - strand, within Atu3781 at 865.186 kb on - strand, within Atu3781 at 865.231 kb on + strand, within Atu3781
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 862,237 + Atu3779 0.27 +0.6 862,237 + Atu3779 0.27 +0.2 862,327 + Atu3779 0.34 +0.4 862,352 - Atu3779 0.36 +0.5 862,369 + Atu3779 0.38 +0.1 862,369 + Atu3779 0.38 +0.3 862,460 - Atu3779 0.45 +0.1 862,509 - Atu3779 0.49 +0.2 862,546 - Atu3779 0.52 +0.3 862,620 + Atu3779 0.58 +0.0 862,740 - Atu3779 0.68 +0.3 862,746 - Atu3779 0.69 -0.5 862,860 + Atu3779 0.78 +0.6 862,868 - Atu3779 0.79 -0.2 862,868 - Atu3779 0.79 -1.5 862,933 + Atu3779 0.84 +0.0 862,938 + Atu3779 0.84 +1.0 863,001 - Atu3779 0.90 +0.4 863,057 + +1.4 863,107 + +0.7 863,119 + -0.1 863,122 - +0.1 863,163 + -0.1 863,180 - +0.0 863,249 + +0.4 863,306 - +0.9 863,440 + Atu3780 0.20 +2.7 863,609 - Atu3780 0.34 +0.6 863,609 - Atu3780 0.34 +0.1 863,628 - Atu3780 0.35 +0.6 863,816 + Atu3780 0.50 +0.6 863,856 + Atu3780 0.54 +1.3 864,159 + Atu3780 0.78 +0.7 864,159 + Atu3780 0.78 +0.0 864,167 - Atu3780 0.79 +0.1 864,217 - Atu3780 0.83 +0.4 864,217 - Atu3780 0.83 +0.9 864,532 + -0.5 864,545 - -0.5 864,599 - +0.1 864,724 - -0.5 864,724 - -0.2 864,741 - -0.1 864,762 - Atu3781 0.12 -1.1 864,796 + Atu3781 0.17 -0.4 864,796 + Atu3781 0.17 -1.1 864,804 - Atu3781 0.19 +0.1 864,804 - Atu3781 0.19 -0.4 864,815 + Atu3781 0.20 +0.3 864,934 + Atu3781 0.38 -0.3 864,982 + Atu3781 0.45 -0.0 865,055 + Atu3781 0.56 -0.1 865,091 + Atu3781 0.61 -0.5 865,173 + Atu3781 0.73 +0.7 865,175 + Atu3781 0.73 -0.8 865,181 - Atu3781 0.74 -0.0 865,181 - Atu3781 0.74 -0.1 865,186 - Atu3781 0.75 -0.6 865,231 + Atu3781 0.82 -0.2
Or see this region's nucleotide sequence