Strain Fitness in Agrobacterium fabrum C58 around Atu3712

Experiment: pinene 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3711 and Atu3712 are separated by 24 nucleotidesAtu3712 and Atu3713 are separated by 173 nucleotidesAtu3713 and Atu3714 are separated by 210 nucleotides Atu3711: Atu3711 - hypothetical protein, at 793,101 to 794,432 Atu3711 Atu3712: Atu3712 - hypothetical protein, at 794,457 to 795,446 Atu3712 Atu3713: Atu3713 - omp16 protein, at 795,620 to 796,153 Atu3713 Atu3714: Atu3714 - translocation protein TolB, at 796,364 to 797,671 Atu3714 Position (kb) 794 795 796Strain fitness (log2 ratio) -1 0 1at 794.532 kb on - strandat 794.532 kb on - strandat 794.541 kb on - strandat 794.748 kb on - strand, within Atu3712at 794.753 kb on - strand, within Atu3712at 794.806 kb on - strand, within Atu3712at 795.616 kb on - strandat 796.231 kb on + strandat 796.266 kb on + strandat 796.293 kb on - strandat 796.341 kb on - strandat 796.360 kb on + strandat 796.365 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pinene 5 mM
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794,532 - -0.6
794,532 - -0.6
794,541 - +0.3
794,748 - Atu3712 0.29 -1.7
794,753 - Atu3712 0.30 -1.5
794,806 - Atu3712 0.35 -0.4
795,616 - -0.1
796,231 + -0.1
796,266 + +0.2
796,293 - +0.3
796,341 - -0.9
796,360 + -0.3
796,365 - +0.4

Or see this region's nucleotide sequence