Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3174 and Atu3175 are separated by 38 nucleotides Atu3175 and Atu3176 overlap by 4 nucleotides Atu3176 and Atu3177 are separated by 216 nucleotides
Atu3174: Atu3174 - sugar ABC transporter substrate-binding protein, at 183,965 to 185,224
Atu3174
Atu3175: Atu3175 - hypothetical protein, at 185,263 to 186,435
Atu3175
Atu3176: Atu3176 - GntR family transcriptional regulator, at 186,432 to 187,148
Atu3176
Atu3177: Atu3177 - ribonuclease H, at 187,365 to 187,838
Atu3177
Position (kb) 185
186
187 Strain fitness (log2 ratio) -1
0
1 at 184.275 kb on - strand, within Atu3174 at 184.293 kb on - strand, within Atu3174 at 184.556 kb on + strand, within Atu3174 at 184.564 kb on - strand, within Atu3174 at 184.604 kb on - strand, within Atu3174 at 184.618 kb on + strand, within Atu3174 at 184.626 kb on - strand, within Atu3174 at 184.648 kb on + strand, within Atu3174 at 184.658 kb on + strand, within Atu3174 at 184.692 kb on - strand, within Atu3174 at 184.718 kb on - strand, within Atu3174 at 184.813 kb on + strand, within Atu3174 at 184.821 kb on - strand, within Atu3174 at 184.926 kb on - strand, within Atu3174 at 184.926 kb on - strand, within Atu3174 at 185.005 kb on + strand, within Atu3174 at 185.045 kb on - strand, within Atu3174 at 185.132 kb on + strand at 185.140 kb on - strand at 185.787 kb on + strand, within Atu3175 at 185.881 kb on + strand, within Atu3175 at 185.948 kb on - strand, within Atu3175 at 185.996 kb on - strand, within Atu3175 at 186.082 kb on - strand, within Atu3175 at 186.135 kb on - strand, within Atu3175 at 186.163 kb on - strand, within Atu3175 at 186.163 kb on - strand, within Atu3175 at 186.238 kb on + strand, within Atu3175 at 186.249 kb on + strand, within Atu3175 at 186.394 kb on + strand at 186.407 kb on + strand at 186.523 kb on + strand, within Atu3176 at 186.523 kb on + strand, within Atu3176 at 186.525 kb on - strand, within Atu3176 at 186.531 kb on - strand, within Atu3176 at 186.584 kb on + strand, within Atu3176 at 186.584 kb on - strand, within Atu3176 at 186.592 kb on - strand, within Atu3176 at 186.623 kb on - strand, within Atu3176 at 186.700 kb on - strand, within Atu3176 at 186.700 kb on - strand, within Atu3176 at 186.761 kb on + strand, within Atu3176 at 186.769 kb on + strand, within Atu3176 at 186.803 kb on + strand, within Atu3176 at 186.831 kb on + strand, within Atu3176 at 186.837 kb on - strand, within Atu3176 at 186.994 kb on + strand, within Atu3176 at 187.052 kb on - strand, within Atu3176 at 187.058 kb on + strand, within Atu3176 at 187.089 kb on - strand at 187.143 kb on + strand at 187.151 kb on - strand at 187.151 kb on - strand at 187.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 184,275 - Atu3174 0.25 -0.1 184,293 - Atu3174 0.26 -0.1 184,556 + Atu3174 0.47 +0.3 184,564 - Atu3174 0.48 -0.3 184,604 - Atu3174 0.51 +0.4 184,618 + Atu3174 0.52 -0.2 184,626 - Atu3174 0.52 -0.3 184,648 + Atu3174 0.54 +0.1 184,658 + Atu3174 0.55 +0.5 184,692 - Atu3174 0.58 -0.2 184,718 - Atu3174 0.60 +0.1 184,813 + Atu3174 0.67 -0.0 184,821 - Atu3174 0.68 -0.2 184,926 - Atu3174 0.76 +0.6 184,926 - Atu3174 0.76 +0.1 185,005 + Atu3174 0.83 -0.3 185,045 - Atu3174 0.86 +0.6 185,132 + -0.4 185,140 - -0.1 185,787 + Atu3175 0.45 -0.6 185,881 + Atu3175 0.53 -0.5 185,948 - Atu3175 0.58 -0.5 185,996 - Atu3175 0.62 -1.0 186,082 - Atu3175 0.70 +0.0 186,135 - Atu3175 0.74 +0.3 186,163 - Atu3175 0.77 -0.1 186,163 - Atu3175 0.77 -0.7 186,238 + Atu3175 0.83 +0.1 186,249 + Atu3175 0.84 -0.7 186,394 + -1.1 186,407 + +0.0 186,523 + Atu3176 0.13 -0.4 186,523 + Atu3176 0.13 +0.1 186,525 - Atu3176 0.13 -0.7 186,531 - Atu3176 0.14 -0.1 186,584 + Atu3176 0.21 +0.0 186,584 - Atu3176 0.21 +1.1 186,592 - Atu3176 0.22 -0.1 186,623 - Atu3176 0.27 -0.1 186,700 - Atu3176 0.37 +0.4 186,700 - Atu3176 0.37 +0.1 186,761 + Atu3176 0.46 -0.2 186,769 + Atu3176 0.47 +0.5 186,803 + Atu3176 0.52 -0.0 186,831 + Atu3176 0.56 -0.6 186,837 - Atu3176 0.56 +0.7 186,994 + Atu3176 0.78 -0.2 187,052 - Atu3176 0.86 +1.1 187,058 + Atu3176 0.87 +0.1 187,089 - +0.6 187,143 + -0.6 187,151 - -1.4 187,151 - -0.6 187,151 - +0.0
Or see this region's nucleotide sequence