Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3119 and Atu3120 are separated by 21 nucleotides Atu3120 and Atu3121 are separated by 244 nucleotides Atu3121 and Atu3122 are separated by 111 nucleotides Atu3122 and Atu3123 are separated by 28 nucleotides
Atu3119: Atu3119 - hypothetical protein, at 129,191 to 130,426
Atu3119
Atu3120: Atu3120 - hypothetical protein, at 130,448 to 130,945
Atu3120
Atu3121: Atu3121 - cold shock protein, at 131,190 to 131,399
Atu3121
Atu3122: Atu3122 - cold shock protein, at 131,511 to 131,801
Atu3122
Atu3123: Atu3123 - 30S ribosomal protein S21, at 131,830 to 132,066
Atu3123
Position (kb) 130
131 Strain fitness (log2 ratio) -1
0
1
2 at 129.455 kb on + strand, within Atu3119 at 129.480 kb on + strand, within Atu3119 at 129.493 kb on - strand, within Atu3119 at 129.558 kb on - strand, within Atu3119 at 129.835 kb on + strand, within Atu3119 at 129.905 kb on - strand, within Atu3119 at 129.921 kb on + strand, within Atu3119 at 129.954 kb on - strand, within Atu3119 at 130.053 kb on - strand, within Atu3119 at 130.103 kb on - strand, within Atu3119 at 130.112 kb on - strand, within Atu3119 at 130.159 kb on + strand, within Atu3119 at 130.220 kb on - strand, within Atu3119 at 130.233 kb on - strand, within Atu3119 at 130.251 kb on + strand, within Atu3119 at 130.355 kb on - strand at 130.362 kb on + strand at 130.368 kb on - strand at 130.428 kb on - strand at 130.575 kb on - strand, within Atu3120 at 130.844 kb on - strand, within Atu3120 at 130.909 kb on - strand at 130.950 kb on + strand at 131.346 kb on + strand, within Atu3121 at 131.376 kb on + strand, within Atu3121 at 131.384 kb on + strand at 131.465 kb on - strand at 131.507 kb on - strand at 131.582 kb on - strand, within Atu3122 at 131.602 kb on + strand, within Atu3122 at 131.702 kb on + strand, within Atu3122 at 131.737 kb on + strand, within Atu3122 at 131.737 kb on + strand, within Atu3122 at 131.738 kb on - strand, within Atu3122 at 131.758 kb on + strand, within Atu3122
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 129,455 + Atu3119 0.21 -0.2 129,480 + Atu3119 0.23 +0.1 129,493 - Atu3119 0.24 -0.0 129,558 - Atu3119 0.30 +0.2 129,835 + Atu3119 0.52 -0.2 129,905 - Atu3119 0.58 -0.6 129,921 + Atu3119 0.59 +0.2 129,954 - Atu3119 0.62 +0.1 130,053 - Atu3119 0.70 +0.3 130,103 - Atu3119 0.74 +0.7 130,112 - Atu3119 0.75 -0.3 130,159 + Atu3119 0.78 -0.1 130,220 - Atu3119 0.83 +0.5 130,233 - Atu3119 0.84 +0.5 130,251 + Atu3119 0.86 -0.8 130,355 - +0.1 130,362 + +0.1 130,368 - +0.1 130,428 - +0.0 130,575 - Atu3120 0.26 -0.5 130,844 - Atu3120 0.80 +0.1 130,909 - -0.4 130,950 + +0.7 131,346 + Atu3121 0.74 -0.2 131,376 + Atu3121 0.89 +0.8 131,384 + -0.0 131,465 - -0.5 131,507 - -0.6 131,582 - Atu3122 0.24 +0.5 131,602 + Atu3122 0.31 +1.7 131,702 + Atu3122 0.66 +2.1 131,737 + Atu3122 0.78 +0.1 131,737 + Atu3122 0.78 -0.0 131,738 - Atu3122 0.78 +0.1 131,758 + Atu3122 0.85 -0.2
Or see this region's nucleotide sequence