Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3077 and Atu3078 are separated by 134 nucleotides Atu3078 and Atu3079 are separated by 9 nucleotides
Atu3077: Atu3077 - beta-lactamase, at 82,966 to 84,123
Atu3077
Atu3078: Atu3078 - LysR family transcriptional regulator, at 84,258 to 85,136
Atu3078
Atu3079: Atu3079 - chromate transport protein, at 85,146 to 86,363
Atu3079
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1 at 83.262 kb on - strand, within Atu3077 at 83.339 kb on + strand, within Atu3077 at 83.426 kb on - strand, within Atu3077 at 83.479 kb on - strand, within Atu3077 at 83.543 kb on - strand, within Atu3077 at 83.752 kb on + strand, within Atu3077 at 83.803 kb on + strand, within Atu3077 at 83.847 kb on + strand, within Atu3077 at 83.920 kb on - strand, within Atu3077 at 84.065 kb on + strand at 84.065 kb on - strand at 84.080 kb on - strand at 84.149 kb on - strand at 84.195 kb on + strand at 84.347 kb on - strand, within Atu3078 at 84.433 kb on + strand, within Atu3078 at 84.441 kb on - strand, within Atu3078 at 84.453 kb on + strand, within Atu3078 at 84.523 kb on - strand, within Atu3078 at 84.727 kb on + strand, within Atu3078 at 84.737 kb on + strand, within Atu3078 at 84.822 kb on - strand, within Atu3078 at 85.010 kb on + strand, within Atu3078 at 85.016 kb on + strand, within Atu3078 at 85.120 kb on - strand at 85.121 kb on + strand at 85.144 kb on + strand at 85.156 kb on - strand at 85.182 kb on + strand at 85.182 kb on + strand at 85.190 kb on - strand at 85.249 kb on - strand at 85.288 kb on + strand, within Atu3079 at 85.467 kb on - strand, within Atu3079 at 85.473 kb on + strand, within Atu3079 at 85.503 kb on + strand, within Atu3079 at 85.504 kb on - strand, within Atu3079 at 85.608 kb on + strand, within Atu3079 at 85.690 kb on + strand, within Atu3079 at 85.693 kb on - strand, within Atu3079 at 85.698 kb on - strand, within Atu3079 at 85.721 kb on + strand, within Atu3079 at 85.782 kb on + strand, within Atu3079 at 85.782 kb on + strand, within Atu3079 at 85.814 kb on - strand, within Atu3079 at 85.944 kb on + strand, within Atu3079 at 85.990 kb on - strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.108 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.113 kb on + strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.116 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.121 kb on - strand, within Atu3079 at 86.129 kb on + strand, within Atu3079
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 83,262 - Atu3077 0.26 +0.1 83,339 + Atu3077 0.32 -0.2 83,426 - Atu3077 0.40 +0.7 83,479 - Atu3077 0.44 +0.1 83,543 - Atu3077 0.50 +0.1 83,752 + Atu3077 0.68 -0.3 83,803 + Atu3077 0.72 -0.5 83,847 + Atu3077 0.76 +0.6 83,920 - Atu3077 0.82 +0.7 84,065 + +0.4 84,065 - +0.4 84,080 - -1.2 84,149 - +0.0 84,195 + +0.2 84,347 - Atu3078 0.10 +0.0 84,433 + Atu3078 0.20 +0.1 84,441 - Atu3078 0.21 -0.3 84,453 + Atu3078 0.22 -0.4 84,523 - Atu3078 0.30 +0.1 84,727 + Atu3078 0.53 +0.5 84,737 + Atu3078 0.54 -0.5 84,822 - Atu3078 0.64 -0.0 85,010 + Atu3078 0.86 -0.2 85,016 + Atu3078 0.86 +0.0 85,120 - +0.1 85,121 + +0.8 85,144 + +0.1 85,156 - -0.1 85,182 + +0.4 85,182 + -0.1 85,190 - -0.2 85,249 - +0.5 85,288 + Atu3079 0.12 -1.3 85,467 - Atu3079 0.26 +0.0 85,473 + Atu3079 0.27 -0.1 85,503 + Atu3079 0.29 +0.7 85,504 - Atu3079 0.29 -0.5 85,608 + Atu3079 0.38 +0.1 85,690 + Atu3079 0.45 -0.3 85,693 - Atu3079 0.45 -0.4 85,698 - Atu3079 0.45 +0.1 85,721 + Atu3079 0.47 -0.9 85,782 + Atu3079 0.52 -0.1 85,782 + Atu3079 0.52 +0.3 85,814 - Atu3079 0.55 -0.1 85,944 + Atu3079 0.66 -0.5 85,990 - Atu3079 0.69 -0.9 86,108 + Atu3079 0.79 +1.1 86,108 + Atu3079 0.79 -0.1 86,108 + Atu3079 0.79 +0.0 86,108 + Atu3079 0.79 +0.5 86,113 + Atu3079 0.79 +0.0 86,113 + Atu3079 0.79 -0.5 86,113 + Atu3079 0.79 +0.1 86,113 + Atu3079 0.79 +0.6 86,113 + Atu3079 0.79 -0.1 86,116 - Atu3079 0.80 -0.0 86,116 - Atu3079 0.80 -0.1 86,116 - Atu3079 0.80 +0.4 86,121 - Atu3079 0.80 -0.3 86,121 - Atu3079 0.80 +0.2 86,121 - Atu3079 0.80 +1.3 86,121 - Atu3079 0.80 +0.2 86,129 + Atu3079 0.81 +0.0
Or see this region's nucleotide sequence