Strain Fitness in Agrobacterium fabrum C58 around Atu2677

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
2,659,374	-				-0.1
2,659,392	+				-1.3
2,659,400	-				-1.0
2,659,426	-				+0.4
2,659,426	-				-0.7
2,659,431	-				-0.4
2,659,443	+				-0.0
2,659,445	+				+0.5
2,659,463	-				+0.6
2,659,463	-				+0.4
2,659,509	-				-0.8
2,659,532	-				-0.1
2,659,543	-				-1.0
2,659,663	+		Atu2675	0.35	+0.7
2,659,694	-		Atu2675	0.44	+0.5
2,659,718	-		Atu2675	0.50	+0.1
2,659,752	+		Atu2675	0.59	-0.1
2,659,817	+		Atu2675	0.76	-0.3
2,659,937	-				+0.5
2,659,984	+				+0.4
2,659,992	-		Atu2676	0.10	-0.0
2,659,992	-		Atu2676	0.10	-0.3
2,660,019	+		Atu2676	0.19	+0.4
2,660,019	+		Atu2676	0.19	-1.5
2,660,021	+		Atu2676	0.20	+0.2
2,660,021	+		Atu2676	0.20	-0.1
2,660,027	-		Atu2676	0.22	+0.0
2,660,115	+		Atu2676	0.51	+1.3
2,660,201	+		Atu2676	0.79	+1.3
2,660,214	-		Atu2676	0.83	+0.8
2,660,351	-				+0.0
2,660,353	+				-0.4
2,660,403	-		Atu2677	0.16	+1.2
2,660,413	+		Atu2677	0.18	+0.5
2,660,539	+		Atu2677	0.45	-0.3
2,660,660	+		Atu2677	0.70	-0.9
2,660,695	+		Atu2677	0.77	+1.1
2,660,767	-				-0.3
2,660,784	+				+0.3
2,660,784	+				-0.5
2,660,784	+				-0.4
2,660,880	+		Atu2678	0.24	+0.6
2,660,990	-		Atu2678	0.42	+0.5
2,660,992	+		Atu2678	0.43	-0.5
2,661,162	-		Atu2678	0.71	+0.1
2,661,172	-		Atu2678	0.73	-0.1
2,661,209	+		Atu2678	0.79	-0.1
2,661,417	+				-0.5
2,661,433	+				+0.8
2,661,482	+		Atu2679	0.13	-0.1
2,661,514	+		Atu2679	0.18	+1.8
2,661,579	+		Atu2679	0.27	-0.5
2,661,587	-		Atu2679	0.29	-0.8
2,661,587	-		Atu2679	0.29	-0.2
2,661,601	+		Atu2679	0.31	-0.1
2,661,644	-		Atu2679	0.37	+0.1
2,661,722	-		Atu2679	0.49	+0.1
2,661,767	-		Atu2679	0.56	-0.9
2,661,786	-		Atu2679	0.59	+0.0
2,661,802	+		Atu2679	0.62	-0.1