Strain Fitness in Agrobacterium fabrum C58 around Atu2511

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
2,478,533	-				+0.1
2,478,847	-		Atu2510	0.39	-0.0
2,478,885	+		Atu2510	0.42	-0.1
2,478,900	+		Atu2510	0.44	-0.3
2,478,916	+		Atu2510	0.45	+0.5
2,478,981	+		Atu2510	0.51	+0.4
2,479,015	+		Atu2510	0.54	-0.1
2,479,020	+		Atu2510	0.55	+0.0
2,479,020	+		Atu2510	0.55	+0.4
2,479,020	+		Atu2510	0.55	-0.6
2,479,020	+		Atu2510	0.55	+0.6
2,479,020	+		Atu2510	0.55	+0.4
2,479,028	-		Atu2510	0.56	-0.4
2,479,079	-		Atu2510	0.60	+0.8
2,479,084	+		Atu2510	0.61	+0.7
2,479,091	-		Atu2510	0.62	+0.0
2,479,091	-		Atu2510	0.62	+0.4
2,479,198	-		Atu2510	0.72	+0.5
2,479,301	-		Atu2510	0.81	+0.4
2,479,347	+		Atu2510	0.86	-0.2
2,479,347	+		Atu2510	0.86	-2.2
2,479,347	+		Atu2510	0.86	-0.5
2,479,367	+		Atu2510	0.88	+0.2
2,479,416	-				+0.2
2,479,481	-				+0.1
2,479,541	+				+0.5
2,479,562	-				+0.2
2,479,779	-		Atu2511	0.30	+0.1
2,479,825	+		Atu2511	0.36	+0.3
2,479,825	+		Atu2511	0.36	+0.7
2,479,868	+		Atu2511	0.40	+0.7
2,479,869	+		Atu2511	0.41	+0.1
2,479,981	+		Atu2511	0.54	+0.0
2,480,016	-		Atu2511	0.58	+0.4
2,480,247	+		Atu2511	0.84	+0.3
2,480,400	-				+0.6
2,480,466	+				-0.7
2,480,581	-		Atu2512	0.14	+0.2
2,480,644	+		Atu2512	0.21	+1.6
2,480,660	+		Atu2512	0.23	+0.0
2,480,660	+		Atu2512	0.23	-0.0
2,480,753	+		Atu2512	0.33	-0.9
2,480,881	-		Atu2512	0.47	+0.1
2,480,896	+		Atu2512	0.48	-0.1
2,480,927	+		Atu2512	0.52	+0.8
2,480,937	+		Atu2512	0.53	-0.2
2,481,041	+		Atu2512	0.64	-0.3
2,481,044	-		Atu2512	0.64	-0.0
2,481,050	+		Atu2512	0.65	+1.2
2,481,052	+		Atu2512	0.65	-1.4
2,481,083	+		Atu2512	0.69	-0.1
2,481,087	+		Atu2512	0.69	-0.2
2,481,101	-		Atu2512	0.71	+0.1
2,481,117	+		Atu2512	0.72	-0.3
2,481,125	-		Atu2512	0.73	-0.2
2,481,127	+		Atu2512	0.74	+0.3
2,481,225	+		Atu2512	0.84	-0.5
2,481,226	-		Atu2512	0.84	+0.6
2,481,308	+				-1.4
2,481,376	-				-0.4