Strain Fitness in Agrobacterium fabrum C58 around Atu2462

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
2,430,529	+		Atu2460	0.50	-0.1
2,430,529	+		Atu2460	0.50	-0.4
2,430,529	+		Atu2460	0.50	+0.8
2,430,529	+		Atu2460	0.50	-0.2
2,430,529	+		Atu2460	0.50	-0.7
2,430,529	+		Atu2460	0.50	+0.7
2,430,537	-		Atu2460	0.51	-0.3
2,430,537	-		Atu2460	0.51	+0.3
2,430,537	-		Atu2460	0.51	-0.4
2,430,686	+		Atu2460	0.67	-0.4
2,430,809	+		Atu2460	0.81	-0.4
2,430,844	+		Atu2460	0.85	+0.1
2,430,852	-		Atu2460	0.86	-0.1
2,430,877	+		Atu2460	0.89	-0.2
2,430,877	+		Atu2460	0.89	+0.7
2,430,885	-		Atu2460	0.90	+0.3
2,430,931	+				+0.1
2,430,940	-				+0.0
2,430,987	-				+0.1
2,431,007	+				+0.2
2,431,052	-				+0.1
2,431,159	+				+0.6
2,431,194	+				-0.7
2,431,194	+				+0.1
2,431,202	-		Atu2461	0.11	-0.1
2,431,231	-		Atu2461	0.19	-0.1
2,431,289	+		Atu2461	0.36	+0.3
2,431,306	+		Atu2461	0.41	-1.5
2,431,314	-		Atu2461	0.43	+0.3
2,431,314	-		Atu2461	0.43	-0.1
2,431,328	+		Atu2461	0.47	-0.3
2,431,387	-		Atu2461	0.64	+0.6
2,431,387	-		Atu2461	0.64	+0.1
2,431,402	-		Atu2461	0.68	-0.1
2,431,524	+				-0.2
2,431,529	+				-0.2
2,431,542	-				+0.5
2,431,695	+		Atu2462	0.33	+1.1
2,431,859	-		Atu2462	0.64	+0.2
2,431,911	+		Atu2462	0.74	-0.1
2,432,021	-				-0.3
2,432,023	-				-0.5
2,432,042	+				+0.1
2,432,047	+				-0.0
2,432,050	-				+0.2
2,432,050	-				+0.5
2,432,052	+				+0.1
2,432,055	-				-0.1
2,432,055	-				-0.2
2,432,078	+				-0.6
2,432,139	+				-0.2
2,432,269	-				-1.6
2,432,359	+		Atu2463	0.11	+0.7
2,432,363	+		Atu2463	0.12	+0.2
2,432,377	+		Atu2463	0.13	+0.1
2,432,429	-		Atu2463	0.20	+0.0
2,432,493	+		Atu2463	0.28	-0.5
2,432,493	+		Atu2463	0.28	-1.1
2,432,516	+		Atu2463	0.31	-0.9
2,432,516	+		Atu2463	0.31	+0.0
2,432,524	-		Atu2463	0.32	-0.8
2,432,524	-		Atu2463	0.32	+0.4
2,432,568	+		Atu2463	0.38	+0.7
2,432,568	+		Atu2463	0.38	-0.5
2,432,568	+		Atu2463	0.38	+0.3
2,432,576	-		Atu2463	0.39	+0.6
2,432,611	-		Atu2463	0.44	+0.0
2,432,616	+		Atu2463	0.44	+0.3
2,432,624	-		Atu2463	0.45	-2.4
2,432,626	+		Atu2463	0.45	-0.1
2,432,631	+		Atu2463	0.46	-0.4
2,432,634	-		Atu2463	0.46	-0.0
2,432,634	-		Atu2463	0.46	+0.4
2,432,634	-		Atu2463	0.46	-0.2
2,432,634	-		Atu2463	0.46	-0.1
2,432,639	-		Atu2463	0.47	-0.4
2,432,644	-		Atu2463	0.48	+0.1
2,432,644	-		Atu2463	0.48	-0.3
2,432,698	-		Atu2463	0.55	+0.1
2,432,700	+		Atu2463	0.55	+0.5
2,432,703	-		Atu2463	0.55	+0.1
2,432,746	-		Atu2463	0.61	-0.0
2,432,911	-		Atu2463	0.82	-0.5
2,432,948	+		Atu2463	0.87	-0.2
2,432,949	-		Atu2463	0.87	+0.1
2,432,950	+		Atu2463	0.87	-0.0
2,432,967	+		Atu2463	0.89	-0.3
2,432,973	+				+0.3
2,432,973	+				-0.2
2,432,975	-				+1.3
2,432,981	-				-0.4
2,432,981	-				+1.0
2,432,981	-				+0.4
2,433,043	+				+0.3