Strain Fitness in Agrobacterium fabrum C58 around Atu2420

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
2,392,104	+		Atu2419	0.23	-0.1
2,392,178	-		Atu2419	0.31	+0.1
2,392,328	-		Atu2419	0.47	-0.2
2,392,342	+		Atu2419	0.49	-0.3
2,392,362	+		Atu2419	0.51	+0.7
2,392,363	-		Atu2419	0.51	-0.4
2,392,370	-		Atu2419	0.52	+0.1
2,392,376	-		Atu2419	0.53	+0.0
2,392,395	-		Atu2419	0.55	+0.0
2,392,431	+		Atu2419	0.58	+0.0
2,392,654	+		Atu2419	0.82	-0.4
2,392,669	+		Atu2419	0.84	-0.1
2,392,930	-				-0.3
2,393,015	-				+0.2
2,393,039	+				+0.7
2,393,071	-				-0.0
2,393,188	+		Atu2420	0.17	-0.2
2,393,192	+		Atu2420	0.18	-0.6
2,393,253	-		Atu2420	0.29	-0.5
2,393,321	-		Atu2420	0.42	-0.1
2,393,452	-		Atu2420	0.67	-0.6
2,393,564	-		Atu2420	0.89	-0.5
2,393,600	-				+0.1
2,393,612	+				+0.6
2,393,637	+				-0.1
2,393,637	+				-0.2
2,393,738	+		Atu2421	0.13	+0.2
2,393,818	+		Atu2421	0.24	-0.6
2,393,818	+		Atu2421	0.24	+0.4
2,393,896	-		Atu2421	0.35	-0.1
2,394,040	+		Atu2421	0.55	+0.0
2,394,043	+		Atu2421	0.55	+0.4
2,394,059	+		Atu2421	0.58	+0.3
2,394,152	+		Atu2421	0.71	+0.1
2,394,170	-		Atu2421	0.73	-0.4
2,394,298	-				+1.4
2,394,411	+				+0.7
2,394,446	-				+0.1
2,394,479	+				-1.0
2,394,592	+				+0.2