Strain Fitness in Agrobacterium fabrum C58 around Atu2313

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
2,290,120	+				+0.1
2,290,169	+				-1.0
2,290,210	-		Atu2312	0.13	-0.1
2,290,210	-		Atu2312	0.13	-0.1
2,290,267	+		Atu2312	0.19	+0.6
2,290,275	+		Atu2312	0.20	-1.0
2,290,325	+		Atu2312	0.26	-0.3
2,290,325	+		Atu2312	0.26	-0.0
2,290,348	+		Atu2312	0.28	+0.5
2,290,366	-		Atu2312	0.30	+0.2
2,290,472	+		Atu2312	0.41	-0.3
2,290,606	+		Atu2312	0.56	-0.3
2,290,639	-		Atu2312	0.59	+0.2
2,290,678	-		Atu2312	0.64	+0.5
2,290,761	-		Atu2312	0.72	+0.0
2,290,799	-		Atu2312	0.77	-0.4
2,290,808	+		Atu2312	0.78	-1.0
2,290,815	+		Atu2312	0.78	+0.7
2,290,815	+		Atu2312	0.78	+1.2
2,290,830	-		Atu2312	0.80	-0.3
2,290,866	+		Atu2312	0.84	+1.1
2,290,974	-				-0.1
2,291,020	-				+0.8
2,291,020	-				-0.7
2,291,100	+		Atu2313	0.31	+0.1
2,291,100	+		Atu2313	0.31	-0.6
2,291,100	+		Atu2313	0.31	-0.7
2,291,106	-		Atu2313	0.33	-0.2
2,291,108	-		Atu2313	0.34	-0.1
2,291,153	-		Atu2313	0.47	-0.3
2,291,154	-		Atu2313	0.47	+0.7
2,291,247	+		Atu2313	0.74	-0.2
2,291,313	+				+0.7
2,291,421	+				-0.2
2,291,436	+				-0.7
2,291,436	+				-0.2
2,291,436	-				+0.1
2,291,465	+				-0.3
2,291,472	-				+0.3
2,291,473	-				+0.1
2,291,524	+				+0.1
2,291,524	+				-0.3
2,291,532	-				+0.1
2,291,626	-				-0.1
2,291,765	+				-0.6
2,291,773	-				+0.0
2,291,779	+				+0.9
2,291,779	+				+0.1
2,291,836	-				-0.2
2,291,871	+				-0.3
2,291,876	+				-0.0
2,291,911	-				+0.3
2,291,911	-				-0.2
2,291,975	+		Atu2314	0.14	+0.2
2,291,995	+		Atu2314	0.16	+0.5
2,292,089	-		Atu2314	0.23	-0.0
2,292,112	-		Atu2314	0.25	+0.1
2,292,148	-		Atu2314	0.28	-0.4
2,292,148	-		Atu2314	0.28	+0.3
2,292,148	-		Atu2314	0.28	+0.0
2,292,150	+		Atu2314	0.28	-0.1
2,292,150	+		Atu2314	0.28	+0.4
2,292,150	+		Atu2314	0.28	-0.7
2,292,150	+		Atu2314	0.28	+0.5
2,292,158	-		Atu2314	0.29	+0.5
2,292,158	-		Atu2314	0.29	-0.1
2,292,237	+		Atu2314	0.35	-0.8
2,292,296	-		Atu2314	0.40	-0.5
2,292,308	-		Atu2314	0.41	+0.2