Strain Fitness in Agrobacterium fabrum C58 around Atu2163

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
2,128,660	-				-0.0
2,128,711	-				+1.6
2,128,742	+				+0.1
2,128,805	-				+0.6
2,128,844	+		Atu2162	0.13	+0.5
2,128,930	+		Atu2162	0.25	+0.0
2,129,127	+		Atu2162	0.51	-0.2
2,129,133	-		Atu2162	0.52	-0.5
2,129,181	+		Atu2162	0.59	+0.2
2,129,181	+		Atu2162	0.59	-0.4
2,129,189	-		Atu2162	0.60	-0.7
2,129,189	-		Atu2162	0.60	-0.3
2,129,310	-		Atu2162	0.76	+0.3
2,129,344	-		Atu2162	0.81	+1.1
2,129,389	-		Atu2162	0.87	+0.4
2,129,430	+				-0.2
2,129,443	-				+0.0
2,129,535	-				+0.2
2,129,636	-				+0.3
2,129,674	-				-2.0
2,129,716	-		Atu2163	0.21	-0.7
2,129,770	-		Atu2163	0.37	-0.6
2,130,011	+				+0.2
2,130,038	+				+0.6
2,130,039	+				-0.2
2,130,039	+				+0.5
2,130,039	+				-0.2
2,130,039	+				+0.8
2,130,040	-				-0.2
2,130,047	-				+0.4
2,130,047	-				-0.1
2,130,047	-				+0.2
2,130,097	+				+0.2
2,130,182	+		Atu2164	0.12	+0.4
2,130,199	-		Atu2164	0.16	+0.6
2,130,199	-		Atu2164	0.16	+0.0
2,130,199	-		Atu2164	0.16	+0.0
2,130,203	+		Atu2164	0.17	+0.1
2,130,386	+		Atu2164	0.60	+0.4
2,130,427	-		Atu2164	0.70	-0.1
2,130,466	-		Atu2164	0.79	-0.1
2,130,827	+				+2.4
2,130,865	+				-1.6
2,130,865	+				-0.0
2,130,923	-				+1.2