Strain Fitness in Agrobacterium fabrum C58 around Atu1628

Experiment: pinene 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pinene 5 mM
1,613,350	+		Atu1626	0.62	-0.3
1,613,588	+		Atu1626	0.89	+0.4
1,613,601	-				-0.3
1,613,627	-				+0.5
1,613,639	+				+1.0
1,613,639	+				+0.1
1,613,639	+				-0.8
1,613,647	-				+0.2
1,613,688	+				+0.6
1,613,688	+				+0.1
1,613,696	-				+0.0
1,613,719	+				-0.1
1,613,747	+				+1.2
1,613,764	-		Atu1627	0.11	+0.2
1,613,764	-		Atu1627	0.11	+0.6
1,613,774	-		Atu1627	0.13	+1.4
1,613,774	-		Atu1627	0.13	+0.0
1,613,953	-		Atu1627	0.42	-0.1
1,614,012	+		Atu1627	0.52	+0.2
1,614,013	-		Atu1627	0.52	+0.3
1,614,018	-		Atu1627	0.53	-0.4
1,614,020	-		Atu1627	0.53	-0.4
1,614,054	+		Atu1627	0.59	+0.0
1,614,056	+		Atu1627	0.59	-0.3
1,614,062	-		Atu1627	0.60	-0.6
1,614,110	-		Atu1627	0.68	-0.3
1,614,112	+		Atu1627	0.68	-1.4
1,614,164	-		Atu1627	0.77	+0.1
1,614,169	-		Atu1627	0.78	-0.1
1,614,189	+		Atu1627	0.81	-0.1
1,614,381	-				+0.0
1,614,523	-		Atu1628	0.49	+0.2
1,614,525	+		Atu1628	0.50	-0.2
1,614,558	-		Atu1628	0.59	+0.4
1,614,559	+		Atu1628	0.59	+0.9
1,614,682	+				-0.2
1,614,727	+				-0.1
1,614,979	-		Atu1629	0.88	-0.2
1,615,116	-				+1.3
1,615,186	+				-0.1
1,615,317	-				+0.2
1,615,441	-		Atu1630	0.17	+0.3
1,615,463	-		Atu1630	0.19	+0.1
1,615,510	+		Atu1630	0.22	-2.0
1,615,552	-		Atu1630	0.24	-0.6
1,615,579	+		Atu1630	0.26	+0.1
1,615,593	+		Atu1630	0.27	+1.1
1,615,637	+		Atu1630	0.30	-0.2
1,615,641	-		Atu1630	0.30	-0.5
1,615,663	-		Atu1630	0.32	+0.0